JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KIF6_chr6_39324990_39730408	0/0	t0035	6641	1	1	0	0	0	0	copy fasta	KIF6	chr6	39324990	39730408
KIF6_chr6_39324990_39730408	0/0	t0036	6642	1	0	0	1	0	0	copy fasta	KIF6	chr6	39324990	39730408
KIF6_chr6_39324990_39730408	0/0	t0037	6641	1	0	1	0	0	0	copy fasta	KIF6	chr6	39324990	39730408
KIF6_chr6_39324990_39730408	0/0	t0038	6641	1	0	0	0	1	0	copy fasta	KIF6	chr6	39324990	39730408
KIF6_chr6_39324990_39730408	0/0	t0039	6640	1	0	0	1	0	0	copy fasta	KIF6	chr6	39324990	39730408
KIF6_chr6_39324990_39730408	0/0	t0040	6641	1	1	0	0	0	0	copy fasta	KIF6	chr6	39324990	39730408
KIF6_chr6_39324990_39730408	0/0	t0041	6640	1	1	0	0	0	0	copy fasta	KIF6	chr6	39324990	39730408
KIF6_chr6_39324990_39730408	0/0	t0042	6642	1	0	1	0	0	0	copy fasta	KIF6	chr6	39324990	39730408
KIF6_chr6_39324990_39730408	0/0	t0043	6641	1	1	0	0	0	0	copy fasta	KIF6	chr6	39324990	39730408
KIF6_chr6_39324990_39730408	0/0	t0044	6643	1	1	0	0	0	0	copy fasta	KIF6	chr6	39324990	39730408
KIF6_chr6_39324990_39730408	0/0	t0045	6642	1	1	0	0	0	0	copy fasta	KIF6	chr6	39324990	39730408
KIF6_chr6_39324990_39730408	0/0	t0046	6634	1	1	0	0	0	0	copy fasta	KIF6	chr6	39324990	39730408
KIF6_chr6_39324990_39730408	0/0	t0047	6643	1	1	0	0	0	0	copy fasta	KIF6	chr6	39324990	39730408
KIF6_chr6_39324990_39730408	0/0	t0048	6642	1	1	0	0	0	0	copy fasta	KIF6	chr6	39324990	39730408
KIF6_chr6_39324990_39730408	0/0	t0049	6639	1	1	0	0	0	0	copy fasta	KIF6	chr6	39324990	39730408
KIF6_chr6_39324990_39730408	0/0	t0050	6635	1	1	0	0	0	0	copy fasta	KIF6	chr6	39324990	39730408
KIF7_chr15_89622977_89660467	1/1	t0001	536	185	26	38	84	12	23	copy fasta	KIF7	chr15	89622977	89660467
KIF7_chr15_89622977_89660467	0/0	t0002	536	160	48	26	62	5	19	copy fasta	KIF7	chr15	89622977	89660467
KIF7_chr15_89622977_89660467	0/0	t0003	536	19	1	1	15	1	1	copy fasta	KIF7	chr15	89622977	89660467
KIF7_chr15_89622977_89660467	0/0	t0004	536	10	7	3	0	0	0	copy fasta	KIF7	chr15	89622977	89660467
KIF7_chr15_89622977_89660467	0/0	t0005	536	4	0	0	4	0	0	copy fasta	KIF7	chr15	89622977	89660467
KIF7_chr15_89622977_89660467	0/0	t0006	536	3	0	0	2	0	1	copy fasta	KIF7	chr15	89622977	89660467
KIF7_chr15_89622977_89660467	0/0	t0007	555	2	2	0	0	0	0	copy fasta	KIF7	chr15	89622977	89660467
KIF7_chr15_89622977_89660467	0/0	t0008	536	2	0	0	2	0	0	copy fasta	KIF7	chr15	89622977	89660467
KIF7_chr15_89622977_89660467	0/0	t0009	536	2	2	0	0	0	0	copy fasta	KIF7	chr15	89622977	89660467
KIF7_chr15_89622977_89660467	0/0	t0010	536	1	0	0	1	0	0	copy fasta	KIF7	chr15	89622977	89660467
KIF7_chr15_89622977_89660467	0/0	t0011	536	1	1	0	0	0	0	copy fasta	KIF7	chr15	89622977	89660467
KIF7_chr15_89622977_89660467	0/0	t0012	536	1	1	0	0	0	0	copy fasta	KIF7	chr15	89622977	89660467
KIF9_chr3_47222998_47287799	1/1	t0001	965	314	72	65	127	10	38	copy fasta	KIF9	chr3	47222998	47287799
KIF9_chr3_47222998_47287799	0/0	t0002	965	16	15	1	0	0	0	copy fasta	KIF9	chr3	47222998	47287799
KIF9_chr3_47222998_47287799	0/0	t0003	965	1	0	0	1	0	0	copy fasta	KIF9	chr3	47222998	47287799
KIF9_chr3_47222998_47287799	0/0	t0004	965	1	1	0	0	0	0	copy fasta	KIF9	chr3	47222998	47287799
KIF9_chr3_47222998_47287799	0/0	t0005	965	1	0	0	0	0	1	copy fasta	KIF9	chr3	47222998	47287799
KIF9_chr3_47222998_47287799	0/0	t0006	965	1	0	0	0	0	1	copy fasta	KIF9	chr3	47222998	47287799
KIFAP3_chr1_169916329_170079695	0/1	t0001	576	309	77	53	129	10	39	copy fasta	KIFAP3	chr1	169916329	170079695
KIFAP3_chr1_169916329_170079695	0/0	t0002	576	49	15	1	29	0	4	copy fasta	KIFAP3	chr1	169916329	170079695
KIFAP3_chr1_169916329_170079695	1/0	t0003	576	9	0	2	4	0	2	copy fasta	KIFAP3	chr1	169916329	170079695
KIFAP3_chr1_169916329_170079695	0/0	t0004	582	5	0	2	0	2	1	copy fasta	KIFAP3	chr1	169916329	170079695
KIFBP_chr10_68983803_69021982	1/0	t0001	597	226	56	38	96	6	29	copy fasta	KIFBP	chr10	68983803	69021982
KIFBP_chr10_68983803_69021982	0/1	t0002	597	147	34	24	67	8	13	copy fasta	KIFBP	chr10	68983803	69021982
KIFBP_chr10_68983803_69021982	0/0	t0003	597	29	3	4	18	0	4	copy fasta	KIFBP	chr10	68983803	69021982
KIFBP_chr10_68983803_69021982	0/0	t0004	597	2	2	0	0	0	0	copy fasta	KIFBP	chr10	68983803	69021982
KIFBP_chr10_68983803_69021982	0/0	t0005	597	1	1	0	0	0	0	copy fasta	KIFBP	chr10	68983803	69021982
KIFBP_chr10_68983803_69021982	0/0	t0006	597	1	0	0	1	0	0	copy fasta	KIFBP	chr10	68983803	69021982
KIFBP_chr10_68983803_69021982	0/0	t0007	597	1	0	0	0	0	1	copy fasta	KIFBP	chr10	68983803	69021982
KIFBP_chr10_68983803_69021982	0/0	t0008	597	1	0	0	0	0	1	copy fasta	KIFBP	chr10	68983803	69021982
KIFC1_chr6_33386823_33414896	0/0	t0001	366	32	21	3	5	1	2	copy fasta	KIFC1	chr6	33386823	33414896
KIFC1_chr6_33386823_33414896	0/1	t0002	370	32	11	5	13	1	1	copy fasta	KIFC1	chr6	33386823	33414896
KIFC1_chr6_33386823_33414896	0/0	t0003	372	31	13	5	8	0	5	copy fasta	KIFC1	chr6	33386823	33414896
KIFC1_chr6_33386823_33414896	0/0	t0004	368	27	7	6	8	0	6	copy fasta	KIFC1	chr6	33386823	33414896