JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KIFC1_chr6_33386823_33414896	0/0	t0005	376	24	0	5	18	0	1	copy fasta	KIFC1	chr6	33386823	33414896
KIFC1_chr6_33386823_33414896	0/0	t0006	352	20	1	9	10	0	0	copy fasta	KIFC1	chr6	33386823	33414896
KIFC1_chr6_33386823_33414896	0/0	t0007	372	18	4	2	9	1	2	copy fasta	KIFC1	chr6	33386823	33414896
KIFC1_chr6_33386823_33414896	0/0	t0008	364	15	5	4	4	1	1	copy fasta	KIFC1	chr6	33386823	33414896
KIFC1_chr6_33386823_33414896	0/0	t0009	374	15	4	3	4	2	2	copy fasta	KIFC1	chr6	33386823	33414896
KIFC1_chr6_33386823_33414896	0/0	t0010	374	12	1	4	7	0	0	copy fasta	KIFC1	chr6	33386823	33414896
KIFC1_chr6_33386823_33414896	0/0	t0011	376	12	5	1	5	0	1	copy fasta	KIFC1	chr6	33386823	33414896
KIFC1_chr6_33386823_33414896	0/0	t0012	378	12	3	1	8	0	0	copy fasta	KIFC1	chr6	33386823	33414896
KIFC1_chr6_33386823_33414896	0/0	t0013	358	9	0	6	2	0	1	copy fasta	KIFC1	chr6	33386823	33414896
KIFC1_chr6_33386823_33414896	0/0	t0014	368	8	1	2	4	0	1	copy fasta	KIFC1	chr6	33386823	33414896
KIFC1_chr6_33386823_33414896	0/0	t0015	382	8	0	4	3	0	1	copy fasta	KIFC1	chr6	33386823	33414896
KIFC1_chr6_33386823_33414896	0/0	t0016	362	8	3	1	2	1	1	copy fasta	KIFC1	chr6	33386823	33414896
KIFC1_chr6_33386823_33414896	0/0	t0017	370	7	1	1	5	0	0	copy fasta	KIFC1	chr6	33386823	33414896
KIFC1_chr6_33386823_33414896	0/0	t0018	380	7	0	1	5	1	0	copy fasta	KIFC1	chr6	33386823	33414896
KIFC1_chr6_33386823_33414896	0/0	t0019	382	5	2	0	3	0	0	copy fasta	KIFC1	chr6	33386823	33414896
KIFC1_chr6_33386823_33414896	0/0	t0020	360	4	0	1	0	1	2	copy fasta	KIFC1	chr6	33386823	33414896
KIFC1_chr6_33386823_33414896	0/0	t0021	380	4	4	0	0	0	0	copy fasta	KIFC1	chr6	33386823	33414896
KIFC1_chr6_33386823_33414896	0/0	t0022	370	3	0	2	0	0	1	copy fasta	KIFC1	chr6	33386823	33414896
KIFC1_chr6_33386823_33414896	0/0	t0023	384	2	0	0	2	0	0	copy fasta	KIFC1	chr6	33386823	33414896
KIFC1_chr6_33386823_33414896	0/0	t0024	386	2	0	0	2	0	0	copy fasta	KIFC1	chr6	33386823	33414896
KIFC1_chr6_33386823_33414896	0/0	t0025	388	2	0	0	2	0	0	copy fasta	KIFC1	chr6	33386823	33414896
KIFC1_chr6_33386823_33414896	0/0	t0026	354	2	1	0	0	0	1	copy fasta	KIFC1	chr6	33386823	33414896
KIFC1_chr6_33386823_33414896	0/0	t0027	360	2	0	2	0	0	0	copy fasta	KIFC1	chr6	33386823	33414896
KIFC1_chr6_33386823_33414896	0/0	t0028	386	2	2	0	0	0	0	copy fasta	KIFC1	chr6	33386823	33414896
KIFC1_chr6_33386823_33414896	0/0	t0029	390	2	1	0	1	0	0	copy fasta	KIFC1	chr6	33386823	33414896
KIFC1_chr6_33386823_33414896	0/0	t0030	370	2	0	2	0	0	0	copy fasta	KIFC1	chr6	33386823	33414896
KIFC1_chr6_33386823_33414896	0/0	t0031	366	1	0	0	1	0	0	copy fasta	KIFC1	chr6	33386823	33414896
KIFC1_chr6_33386823_33414896	0/0	t0032	392	1	0	0	0	1	0	copy fasta	KIFC1	chr6	33386823	33414896
KIFC1_chr6_33386823_33414896	0/0	t0033	402	1	0	0	1	0	0	copy fasta	KIFC1	chr6	33386823	33414896
KIFC1_chr6_33386823_33414896	0/0	t0034	352	1	0	0	1	0	0	copy fasta	KIFC1	chr6	33386823	33414896
KIFC1_chr6_33386823_33414896	0/0	t0035	372	1	0	0	0	0	1	copy fasta	KIFC1	chr6	33386823	33414896
KIFC1_chr6_33386823_33414896	0/0	t0036	374	1	0	0	0	0	1	copy fasta	KIFC1	chr6	33386823	33414896
KIFC1_chr6_33386823_33414896	0/0	t0037	376	1	0	0	0	0	1	copy fasta	KIFC1	chr6	33386823	33414896
KIFC1_chr6_33386823_33414896	0/0	t0038	378	1	1	0	0	0	0	copy fasta	KIFC1	chr6	33386823	33414896
KIFC1_chr6_33386823_33414896	0/0	t0039	372	1	1	0	0	0	0	copy fasta	KIFC1	chr6	33386823	33414896
KIFC1_chr6_33386823_33414896	0/0	t0040	372	1	1	0	0	0	0	copy fasta	KIFC1	chr6	33386823	33414896
KIFC1_chr6_33386823_33414896	0/0	t0041	374	1	1	0	0	0	0	copy fasta	KIFC1	chr6	33386823	33414896
KIFC1_chr6_33386823_33414896	0/0	t0042	376	1	1	0	0	0	0	copy fasta	KIFC1	chr6	33386823	33414896
KIFC1_chr6_33386823_33414896	0/0	t0043	372	1	0	0	1	0	0	copy fasta	KIFC1	chr6	33386823	33414896
KIFC1_chr6_33386823_33414896	0/0	t0044	382	1	0	0	1	0	0	copy fasta	KIFC1	chr6	33386823	33414896
KIFC1_chr6_33386823_33414896	0/0	t0045	388	1	0	0	1	0	0	copy fasta	KIFC1	chr6	33386823	33414896
KIFC1_chr6_33386823_33414896	0/0	t0046	392	1	1	0	0	0	0	copy fasta	KIFC1	chr6	33386823	33414896
KIFC1_chr6_33386823_33414896	0/0	t0047	370	1	0	1	0	0	0	copy fasta	KIFC1	chr6	33386823	33414896
KIFC1_chr6_33386823_33414896	0/0	t0048	382	1	0	1	0	0	0	copy fasta	KIFC1	chr6	33386823	33414896
KIFC2_chr8_144461337_144479202	1/1	t0001	897	387	90	75	168	12	40	copy fasta	KIFC2	chr8	144461337	144479202
KIFC2_chr8_144461337_144479202	0/0	t0002	897	3	0	0	3	0	0	copy fasta	KIFC2	chr8	144461337	144479202
KIFC2_chr8_144461337_144479202	0/0	t0003	897	3	0	0	3	0	0	copy fasta	KIFC2	chr8	144461337	144479202
KIFC2_chr8_144461337_144479202	0/0	t0004	897	1	0	0	1	0	0	copy fasta	KIFC2	chr8	144461337	144479202
KIFC2_chr8_144461337_144479202	0/0	t0005	897	1	1	0	0	0	0	copy fasta	KIFC2	chr8	144461337	144479202
KIFC2_chr8_144461337_144479202	0/0	t0006	897	1	0	0	1	0	0	copy fasta	KIFC2	chr8	144461337	144479202