JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KIFC2_chr8_144461337_144479202	0/0	t0007	897	1	1	0	0	0	0	copy fasta	KIFC2	chr8	144461337	144479202
KIFC2_chr8_144461337_144479202	0/0	t0008	897	1	0	0	1	0	0	copy fasta	KIFC2	chr8	144461337	144479202
KIFC2_chr8_144461337_144479202	0/0	t0009	897	1	0	0	1	0	0	copy fasta	KIFC2	chr8	144461337	144479202
KIFC2_chr8_144461337_144479202	0/0	t0010	897	1	1	0	0	0	0	copy fasta	KIFC2	chr8	144461337	144479202
KIFC2_chr8_144461337_144479202	0/0	t0011	897	1	0	1	0	0	0	copy fasta	KIFC2	chr8	144461337	144479202
KIFC2_chr8_144461337_144479202	0/0	t0012	897	1	1	0	0	0	0	copy fasta	KIFC2	chr8	144461337	144479202
KIFC3_chr16_57753217_57807491	1/0	t0001	879	267	64	47	121	9	25	copy fasta	KIFC3	chr16	57753217	57807491
KIFC3_chr16_57753217_57807491	0/0	t0002	880	48	2	11	32	0	3	copy fasta	KIFC3	chr16	57753217	57807491
KIFC3_chr16_57753217_57807491	0/0	t0003	879	30	0	6	13	4	7	copy fasta	KIFC3	chr16	57753217	57807491
KIFC3_chr16_57753217_57807491	0/1	t0004	879	22	7	0	7	3	4	copy fasta	KIFC3	chr16	57753217	57807491
KIFC3_chr16_57753217_57807491	0/0	t0005	879	6	6	0	0	0	0	copy fasta	KIFC3	chr16	57753217	57807491
KIFC3_chr16_57753217_57807491	0/0	t0006	879	4	4	0	0	0	0	copy fasta	KIFC3	chr16	57753217	57807491
KIFC3_chr16_57753217_57807491	0/0	t0007	879	4	0	2	1	0	1	copy fasta	KIFC3	chr16	57753217	57807491
KIFC3_chr16_57753217_57807491	0/0	t0008	879	3	2	1	0	0	0	copy fasta	KIFC3	chr16	57753217	57807491
KIFC3_chr16_57753217_57807491	0/0	t0009	879	3	3	0	0	0	0	copy fasta	KIFC3	chr16	57753217	57807491
KIFC3_chr16_57753217_57807491	0/0	t0010	867	1	1	0	0	0	0	copy fasta	KIFC3	chr16	57753217	57807491
KIFC3_chr16_57753217_57807491	0/0	t0011	879	1	0	0	1	0	0	copy fasta	KIFC3	chr16	57753217	57807491
KIFC3_chr16_57753217_57807491	0/0	t0012	879	1	0	0	1	0	0	copy fasta	KIFC3	chr16	57753217	57807491
KIFC3_chr16_57753217_57807491	0/0	t0013	879	1	0	1	0	0	0	copy fasta	KIFC3	chr16	57753217	57807491
KIFC3_chr16_57753217_57807491	0/0	t0014	879	1	1	0	0	0	0	copy fasta	KIFC3	chr16	57753217	57807491
KIN_chr10_7745962_7792993	0/0	t0001	4963	64	4	10	41	3	6	copy fasta	KIN	chr10	7745962	7792993
KIN_chr10_7745962_7792993	0/0	t0002	4963	56	7	21	22	2	4	copy fasta	KIN	chr10	7745962	7792993
KIN_chr10_7745962_7792993	0/0	t0003	4962	33	1	5	26	0	1	copy fasta	KIN	chr10	7745962	7792993
KIN_chr10_7745962_7792993	0/0	t0004	4963	27	0	2	22	0	3	copy fasta	KIN	chr10	7745962	7792993
KIN_chr10_7745962_7792993	0/0	t0005	4959	27	2	4	20	0	1	copy fasta	KIN	chr10	7745962	7792993
KIN_chr10_7745962_7792993	0/0	t0006	4963	19	0	2	17	0	0	copy fasta	KIN	chr10	7745962	7792993
KIN_chr10_7745962_7792993	0/0	t0007	4959	13	0	0	12	0	1	copy fasta	KIN	chr10	7745962	7792993
KIN_chr10_7745962_7792993	0/0	t0008	4962	10	0	4	0	0	6	copy fasta	KIN	chr10	7745962	7792993
KIN_chr10_7745962_7792993	0/0	t0009	4963	10	10	0	0	0	0	copy fasta	KIN	chr10	7745962	7792993
KIN_chr10_7745962_7792993	0/0	t0010	4963	8	5	1	1	0	1	copy fasta	KIN	chr10	7745962	7792993
KIN_chr10_7745962_7792993	0/0	t0011	4962	7	0	5	0	1	1	copy fasta	KIN	chr10	7745962	7792993
KIN_chr10_7745962_7792993	0/0	t0012	4962	6	0	0	6	0	0	copy fasta	KIN	chr10	7745962	7792993
KIN_chr10_7745962_7792993	0/0	t0013	4959	6	0	2	0	2	2	copy fasta	KIN	chr10	7745962	7792993
KIN_chr10_7745962_7792993	0/0	t0014	4963	5	0	0	5	0	0	copy fasta	KIN	chr10	7745962	7792993
KIN_chr10_7745962_7792993	0/0	t0015	4963	5	0	0	5	0	0	copy fasta	KIN	chr10	7745962	7792993
KIN_chr10_7745962_7792993	0/0	t0016	5183	5	0	0	5	0	0	copy fasta	KIN	chr10	7745962	7792993
KIN_chr10_7745962_7792993	0/0	t0017	4963	5	5	0	0	0	0	copy fasta	KIN	chr10	7745962	7792993
KIN_chr10_7745962_7792993	0/0	t0018	4963	4	4	0	0	0	0	copy fasta	KIN	chr10	7745962	7792993
KIN_chr10_7745962_7792993	0/0	t0019	4963	4	0	1	2	0	1	copy fasta	KIN	chr10	7745962	7792993
KIN_chr10_7745962_7792993	0/0	t0020	4963	4	4	0	0	0	0	copy fasta	KIN	chr10	7745962	7792993
KIN_chr10_7745962_7792993	0/0	t0021	4963	3	0	0	3	0	0	copy fasta	KIN	chr10	7745962	7792993
KIN_chr10_7745962_7792993	0/0	t0022	4962	3	0	1	2	0	0	copy fasta	KIN	chr10	7745962	7792993
KIN_chr10_7745962_7792993	0/0	t0023	4963	3	3	0	0	0	0	copy fasta	KIN	chr10	7745962	7792993
KIN_chr10_7745962_7792993	0/0	t0024	4959	3	3	0	0	0	0	copy fasta	KIN	chr10	7745962	7792993
KIN_chr10_7745962_7792993	0/0	t0025	4963	2	0	1	1	0	0	copy fasta	KIN	chr10	7745962	7792993
KIN_chr10_7745962_7792993	0/0	t0026	4963	2	2	0	0	0	0	copy fasta	KIN	chr10	7745962	7792993
KIN_chr10_7745962_7792993	0/0	t0027	4963	2	2	0	0	0	0	copy fasta	KIN	chr10	7745962	7792993
KIN_chr10_7745962_7792993	0/0	t0028	4963	2	0	0	2	0	0	copy fasta	KIN	chr10	7745962	7792993
KIN_chr10_7745962_7792993	0/0	t0029	4962	2	0	0	2	0	0	copy fasta	KIN	chr10	7745962	7792993
KIN_chr10_7745962_7792993	0/0	t0030	4963	2	0	0	1	1	0	copy fasta	KIN	chr10	7745962	7792993