JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KIN_chr10_7745962_7792993	0/0	t0031	4963	2	2	0	0	0	0	copy fasta	KIN	chr10	7745962	7792993
KIN_chr10_7745962_7792993	0/0	t0032	4963	2	0	0	1	1	0	copy fasta	KIN	chr10	7745962	7792993
KIN_chr10_7745962_7792993	0/0	t0033	4963	2	0	0	2	0	0	copy fasta	KIN	chr10	7745962	7792993
KIN_chr10_7745962_7792993	0/0	t0034	4963	2	0	0	0	2	0	copy fasta	KIN	chr10	7745962	7792993
KIN_chr10_7745962_7792993	0/0	t0035	5179	2	2	0	0	0	0	copy fasta	KIN	chr10	7745962	7792993
KIN_chr10_7745962_7792993	1/0	t0036	5179	2	1	0	0	0	0	copy fasta	KIN	chr10	7745962	7792993
KIN_chr10_7745962_7792993	0/0	t0037	4959	2	2	0	0	0	0	copy fasta	KIN	chr10	7745962	7792993
KIN_chr10_7745962_7792993	0/0	t0038	4959	2	0	2	0	0	0	copy fasta	KIN	chr10	7745962	7792993
KIN_chr10_7745962_7792993	0/0	t0039	4959	2	1	0	0	0	1	copy fasta	KIN	chr10	7745962	7792993
KIN_chr10_7745962_7792993	0/0	t0040	4959	2	0	0	0	0	2	copy fasta	KIN	chr10	7745962	7792993
KIN_chr10_7745962_7792993	0/0	t0041	5177	2	0	0	1	0	1	copy fasta	KIN	chr10	7745962	7792993
KIN_chr10_7745962_7792993	0/0	t0042	4962	1	0	0	1	0	0	copy fasta	KIN	chr10	7745962	7792993
KIN_chr10_7745962_7792993	0/0	t0043	4963	1	0	0	1	0	0	copy fasta	KIN	chr10	7745962	7792993
KIN_chr10_7745962_7792993	0/0	t0044	4963	1	0	0	1	0	0	copy fasta	KIN	chr10	7745962	7792993
KIN_chr10_7745962_7792993	0/0	t0045	4963	1	0	0	1	0	0	copy fasta	KIN	chr10	7745962	7792993
KIN_chr10_7745962_7792993	0/0	t0046	4963	1	0	0	1	0	0	copy fasta	KIN	chr10	7745962	7792993
KIN_chr10_7745962_7792993	0/0	t0047	4963	1	1	0	0	0	0	copy fasta	KIN	chr10	7745962	7792993
KIN_chr10_7745962_7792993	0/0	t0048	4963	1	0	0	0	1	0	copy fasta	KIN	chr10	7745962	7792993
KIN_chr10_7745962_7792993	0/0	t0049	5181	1	0	0	0	1	0	copy fasta	KIN	chr10	7745962	7792993
KIN_chr10_7745962_7792993	0/0	t0050	5181	1	0	0	0	0	1	copy fasta	KIN	chr10	7745962	7792993
KIN_chr10_7745962_7792993	0/1	t0051	5182	1	0	0	0	0	0	copy fasta	KIN	chr10	7745962	7792993
KIN_chr10_7745962_7792993	0/0	t0052	4963	1	1	0	0	0	0	copy fasta	KIN	chr10	7745962	7792993
KIN_chr10_7745962_7792993	0/0	t0053	4963	1	0	0	1	0	0	copy fasta	KIN	chr10	7745962	7792993
KIN_chr10_7745962_7792993	0/0	t0054	4962	1	0	0	1	0	0	copy fasta	KIN	chr10	7745962	7792993
KIN_chr10_7745962_7792993	0/0	t0055	4963	1	0	0	1	0	0	copy fasta	KIN	chr10	7745962	7792993
KIN_chr10_7745962_7792993	0/0	t0056	4963	1	0	0	1	0	0	copy fasta	KIN	chr10	7745962	7792993
KIN_chr10_7745962_7792993	0/0	t0057	5182	1	0	0	1	0	0	copy fasta	KIN	chr10	7745962	7792993
KIN_chr10_7745962_7792993	0/0	t0058	5183	1	0	0	0	0	1	copy fasta	KIN	chr10	7745962	7792993
KIN_chr10_7745962_7792993	0/0	t0059	4963	1	1	0	0	0	0	copy fasta	KIN	chr10	7745962	7792993
KIN_chr10_7745962_7792993	0/0	t0060	4962	1	1	0	0	0	0	copy fasta	KIN	chr10	7745962	7792993
KIN_chr10_7745962_7792993	0/0	t0061	4962	1	0	1	0	0	0	copy fasta	KIN	chr10	7745962	7792993
KIN_chr10_7745962_7792993	0/0	t0062	4962	1	1	0	0	0	0	copy fasta	KIN	chr10	7745962	7792993
KIN_chr10_7745962_7792993	0/0	t0063	4962	1	0	0	0	0	1	copy fasta	KIN	chr10	7745962	7792993
KIN_chr10_7745962_7792993	0/0	t0064	4962	1	0	0	1	0	0	copy fasta	KIN	chr10	7745962	7792993
KIN_chr10_7745962_7792993	0/0	t0065	4962	1	0	1	0	0	0	copy fasta	KIN	chr10	7745962	7792993
KIN_chr10_7745962_7792993	0/0	t0066	4962	1	0	0	0	1	0	copy fasta	KIN	chr10	7745962	7792993
KIN_chr10_7745962_7792993	0/0	t0067	4963	1	1	0	0	0	0	copy fasta	KIN	chr10	7745962	7792993
KIN_chr10_7745962_7792993	0/0	t0068	4963	1	1	0	0	0	0	copy fasta	KIN	chr10	7745962	7792993
KIN_chr10_7745962_7792993	0/0	t0069	4963	1	1	0	0	0	0	copy fasta	KIN	chr10	7745962	7792993
KIN_chr10_7745962_7792993	0/0	t0070	4963	1	0	1	0	0	0	copy fasta	KIN	chr10	7745962	7792993
KIN_chr10_7745962_7792993	0/0	t0071	5319	1	1	0	0	0	0	copy fasta	KIN	chr10	7745962	7792993
KIN_chr10_7745962_7792993	0/0	t0072	5318	1	1	0	0	0	0	copy fasta	KIN	chr10	7745962	7792993
KIN_chr10_7745962_7792993	0/0	t0073	4963	1	0	0	1	0	0	copy fasta	KIN	chr10	7745962	7792993
KIN_chr10_7745962_7792993	0/0	t0074	4963	1	0	0	0	1	0	copy fasta	KIN	chr10	7745962	7792993
KIN_chr10_7745962_7792993	0/0	t0075	4963	1	1	0	0	0	0	copy fasta	KIN	chr10	7745962	7792993
KIN_chr10_7745962_7792993	0/0	t0076	4963	1	0	0	1	0	0	copy fasta	KIN	chr10	7745962	7792993
KIN_chr10_7745962_7792993	0/0	t0077	4963	1	1	0	0	0	0	copy fasta	KIN	chr10	7745962	7792993
KIN_chr10_7745962_7792993	0/0	t0078	4963	1	0	0	0	0	1	copy fasta	KIN	chr10	7745962	7792993
KIN_chr10_7745962_7792993	0/0	t0079	4963	1	0	0	1	0	0	copy fasta	KIN	chr10	7745962	7792993
KIN_chr10_7745962_7792993	0/0	t0080	4963	1	1	0	0	0	0	copy fasta	KIN	chr10	7745962	7792993