JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KIN_chr10_7745962_7792993	0/0	t0081	5183	1	1	0	0	0	0	copy fasta	KIN	chr10	7745962	7792993
KIN_chr10_7745962_7792993	0/0	t0082	4962	1	1	0	0	0	0	copy fasta	KIN	chr10	7745962	7792993
KIN_chr10_7745962_7792993	0/0	t0083	4959	1	0	0	1	0	0	copy fasta	KIN	chr10	7745962	7792993
KIN_chr10_7745962_7792993	0/0	t0084	4959	1	0	0	1	0	0	copy fasta	KIN	chr10	7745962	7792993
KIN_chr10_7745962_7792993	0/0	t0085	4959	1	1	0	0	0	0	copy fasta	KIN	chr10	7745962	7792993
KIN_chr10_7745962_7792993	0/0	t0086	4959	1	0	1	0	0	0	copy fasta	KIN	chr10	7745962	7792993
KIN_chr10_7745962_7792993	0/0	t0087	4959	1	1	0	0	0	0	copy fasta	KIN	chr10	7745962	7792993
KIN_chr10_7745962_7792993	0/0	t0088	5180	1	1	0	0	0	0	copy fasta	KIN	chr10	7745962	7792993
KIN_chr10_7745962_7792993	0/0	t0089	4959	1	0	1	0	0	0	copy fasta	KIN	chr10	7745962	7792993
KIN_chr10_7745962_7792993	0/0	t0090	4959	1	0	0	1	0	0	copy fasta	KIN	chr10	7745962	7792993
KIN_chr10_7745962_7792993	0/0	t0091	5178	1	0	1	0	0	0	copy fasta	KIN	chr10	7745962	7792993
KIN_chr10_7745962_7792993	0/0	t0092	5179	1	0	0	1	0	0	copy fasta	KIN	chr10	7745962	7792993
KIN_chr10_7745962_7792993	0/0	t0093	4959	1	0	0	1	0	0	copy fasta	KIN	chr10	7745962	7792993
KIN_chr10_7745962_7792993	0/0	t0094	4959	1	1	0	0	0	0	copy fasta	KIN	chr10	7745962	7792993
KIN_chr10_7745962_7792993	0/0	t0095	5167	1	1	0	0	0	0	copy fasta	KIN	chr10	7745962	7792993
KIN_chr10_7745962_7792993	0/0	t0096	5167	1	1	0	0	0	0	copy fasta	KIN	chr10	7745962	7792993
KIN_chr10_7745962_7792993	0/0	t0097	5177	1	0	0	0	0	1	copy fasta	KIN	chr10	7745962	7792993
KIN_chr10_7745962_7792993	0/0	t0098	5177	1	0	0	0	0	1	copy fasta	KIN	chr10	7745962	7792993
KIN_chr10_7745962_7792993	0/0	t0099	5178	1	0	0	1	0	0	copy fasta	KIN	chr10	7745962	7792993
KIN_chr10_7745962_7792993	0/0	t0100	5178	1	0	1	0	0	0	copy fasta	KIN	chr10	7745962	7792993
KIN_chr10_7745962_7792993	0/0	t0101	5179	1	1	0	0	0	0	copy fasta	KIN	chr10	7745962	7792993
KIN_chr10_7745962_7792993	0/0	t0102	5179	1	0	0	1	0	0	copy fasta	KIN	chr10	7745962	7792993
KIN_chr10_7745962_7792993	0/0	t0103	5179	1	0	0	0	0	1	copy fasta	KIN	chr10	7745962	7792993
KIR2DL1_chr19_54764793_54789322	0/0	t0001	568	106	7	15	76	2	6	copy fasta	KIR2DL1	chr19	54764793	54789322
KIR2DL1_chr19_54764793_54789322	0/0	t0002	568	81	3	9	57	1	11	copy fasta	KIR2DL1	chr19	54764793	54789322
KIR2DL1_chr19_54764793_54789322	0/0	t0003	568	58	18	6	26	3	5	copy fasta	KIR2DL1	chr19	54764793	54789322
KIR2DL1_chr19_54764793_54789322	0/0	t0004	568	47	24	7	6	2	8	copy fasta	KIR2DL1	chr19	54764793	54789322
KIR2DL1_chr19_54764793_54789322	0/1	t0005	568	38	22	5	2	1	7	copy fasta	KIR2DL1	chr19	54764793	54789322
KIR2DL1_chr19_54764793_54789322	0/0	t0006	568	3	3	0	0	0	0	copy fasta	KIR2DL1	chr19	54764793	54789322
KIR2DL1_chr19_54764793_54789322	0/0	t0007	568	2	2	0	0	0	0	copy fasta	KIR2DL1	chr19	54764793	54789322
KIR2DL1_chr19_54764793_54789322	0/0	t0008	568	2	1	0	0	0	1	copy fasta	KIR2DL1	chr19	54764793	54789322
KIR2DL1_chr19_54764793_54789322	0/0	t0009	568	2	0	0	2	0	0	copy fasta	KIR2DL1	chr19	54764793	54789322
KIR2DL1_chr19_54764793_54789322	0/0	t0010	568	1	1	0	0	0	0	copy fasta	KIR2DL1	chr19	54764793	54789322
KIR2DL1_chr19_54764793_54789322	0/0	t0011	568	1	1	0	0	0	0	copy fasta	KIR2DL1	chr19	54764793	54789322
KIR2DL1_chr19_54764793_54789322	0/0	t0012	568	1	0	0	1	0	0	copy fasta	KIR2DL1	chr19	54764793	54789322
KIR2DL1_chr19_54764793_54789322	0/0	t0013	510	1	0	0	0	1	0	copy fasta	KIR2DL1	chr19	54764793	54789322
KIR2DL3_chr19_54733513_54758052	0/0	t0001	567	231	28	24	158	6	15	copy fasta	KIR2DL3	chr19	54733513	54758052
KIR2DL3_chr19_54733513_54758052	0/0	t0002	567	30	6	2	20	1	1	copy fasta	KIR2DL3	chr19	54733513	54758052
KIR2DL3_chr19_54733513_54758052	0/0	t0003	567	15	14	0	0	0	1	copy fasta	KIR2DL3	chr19	54733513	54758052
KIR2DL3_chr19_54733513_54758052	0/0	t0004	567	15	2	3	6	1	3	copy fasta	KIR2DL3	chr19	54733513	54758052
KIR2DL3_chr19_54733513_54758052	0/0	t0005	567	4	4	0	0	0	0	copy fasta	KIR2DL3	chr19	54733513	54758052
KIR2DL3_chr19_54733513_54758052	0/0	t0006	567	2	0	0	2	0	0	copy fasta	KIR2DL3	chr19	54733513	54758052
KIR2DL3_chr19_54733513_54758052	0/0	t0007	567	2	0	0	1	0	1	copy fasta	KIR2DL3	chr19	54733513	54758052
KIR2DL3_chr19_54733513_54758052	0/0	t0008	567	1	0	1	0	0	0	copy fasta	KIR2DL3	chr19	54733513	54758052
KIR2DL3_chr19_54733513_54758052	0/0	t0009	567	1	1	0	0	0	0	copy fasta	KIR2DL3	chr19	54733513	54758052
KIR2DL3_chr19_54733513_54758052	0/0	t0010	567	1	0	0	1	0	0	copy fasta	KIR2DL3	chr19	54733513	54758052
KIR2DL3_chr19_54733513_54758052	0/0	t0011	567	1	1	0	0	0	0	copy fasta	KIR2DL3	chr19	54733513	54758052
KIR2DL3_chr19_54733513_54758052	0/0	t0012	567	1	0	0	1	0	0	copy fasta	KIR2DL3	chr19	54733513	54758052
KIR2DL3_chr19_54733513_54758052	0/0	t0013	567	1	0	1	0	0	0	copy fasta	KIR2DL3	chr19	54733513	54758052
KIR2DL3_chr19_54733513_54758052	0/0	t0014	567	1	0	0	0	0	1	copy fasta	KIR2DL3	chr19	54733513	54758052