JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KIR2DL3_chr19_54733513_54758052	0/0	t0015	567	1	0	1	0	0	0	copy fasta	KIR2DL3	chr19	54733513	54758052
KIR2DL3_chr19_54733513_54758052	0/0	t0016	567	1	0	0	1	0	0	copy fasta	KIR2DL3	chr19	54733513	54758052
KIR2DL3_chr19_54733513_54758052	0/0	t0017	567	1	1	0	0	0	0	copy fasta	KIR2DL3	chr19	54733513	54758052
KIR2DL3_chr19_54733513_54758052	0/0	t0018	567	1	0	1	0	0	0	copy fasta	KIR2DL3	chr19	54733513	54758052
KIR2DL3_chr19_54733513_54758052	0/0	t0019	567	1	1	0	0	0	0	copy fasta	KIR2DL3	chr19	54733513	54758052
KIR2DL3_chr19_54733513_54758052	0/0	t0020	567	1	0	1	0	0	0	copy fasta	KIR2DL3	chr19	54733513	54758052
KIR2DL4_chr19_54798610_54819517	0/1	t0001	449	268	75	42	111	18	21	copy fasta	KIR2DL4	chr19	54798610	54819517
KIR2DL4_chr19_54798610_54819517	0/0	t0002	449	114	0	20	83	0	11	copy fasta	KIR2DL4	chr19	54798610	54819517
KIR2DL4_chr19_54798610_54819517	0/0	t0003	449	14	5	2	7	0	0	copy fasta	KIR2DL4	chr19	54798610	54819517
KIR2DL4_chr19_54798610_54819517	0/0	t0004	449	9	0	2	0	0	7	copy fasta	KIR2DL4	chr19	54798610	54819517
KIR2DL4_chr19_54798610_54819517	0/0	t0005	449	2	1	1	0	0	0	copy fasta	KIR2DL4	chr19	54798610	54819517
KIR2DL4_chr19_54798610_54819517	0/0	t0006	449	1	0	0	1	0	0	copy fasta	KIR2DL4	chr19	54798610	54819517
KIR2DL4_chr19_54798610_54819517	0/0	t0007	449	1	1	0	0	0	0	copy fasta	KIR2DL4	chr19	54798610	54819517
KIR2DL4_chr19_54798610_54819517	0/0	t0008	449	1	0	0	0	0	1	copy fasta	KIR2DL4	chr19	54798610	54819517
KIR2DL4_chr19_54798610_54819517	0/0	t0009	449	1	1	0	0	0	0	copy fasta	KIR2DL4	chr19	54798610	54819517
KIR2DL4_chr19_54798610_54819517	0/0	t0010	449	1	1	0	0	0	0	copy fasta	KIR2DL4	chr19	54798610	54819517
KIR2DL4_chr19_54798610_54819517	0/0	t0011	449	1	0	1	0	0	0	copy fasta	KIR2DL4	chr19	54798610	54819517
KIR3DL1_chr19_54811468_54835778	0/1	t0001	537	194	53	28	96	0	16	copy fasta	KIR3DL1	chr19	54811468	54835778
KIR3DL1_chr19_54811468_54835778	0/0	t0002	543	60	7	12	35	3	3	copy fasta	KIR3DL1	chr19	54811468	54835778
KIR3DL1_chr19_54811468_54835778	0/0	t0003	537	45	3	8	28	3	3	copy fasta	KIR3DL1	chr19	54811468	54835778
KIR3DL1_chr19_54811468_54835778	0/0	t0004	537	36	5	3	12	7	9	copy fasta	KIR3DL1	chr19	54811468	54835778
KIR3DL1_chr19_54811468_54835778	0/0	t0005	537	19	8	9	0	1	1	copy fasta	KIR3DL1	chr19	54811468	54835778
KIR3DL1_chr19_54811468_54835778	0/0	t0006	537	15	0	0	15	0	0	copy fasta	KIR3DL1	chr19	54811468	54835778
KIR3DL1_chr19_54811468_54835778	0/0	t0007	537	12	4	1	5	0	2	copy fasta	KIR3DL1	chr19	54811468	54835778
KIR3DL1_chr19_54811468_54835778	0/0	t0008	537	3	3	0	0	0	0	copy fasta	KIR3DL1	chr19	54811468	54835778
KIR3DL1_chr19_54811468_54835778	0/0	t0009	537	3	2	1	0	0	0	copy fasta	KIR3DL1	chr19	54811468	54835778
KIR3DL1_chr19_54811468_54835778	0/0	t0010	537	2	0	0	2	0	0	copy fasta	KIR3DL1	chr19	54811468	54835778
KIR3DL1_chr19_54811468_54835778	0/0	t0011	34	1	1	0	0	0	0	copy fasta	KIR3DL1	chr19	54811468	54835778
KIR3DL1_chr19_54811468_54835778	0/0	t0012	541	1	0	0	1	0	0	copy fasta	KIR3DL1	chr19	54811468	54835778
KIR3DL1_chr19_54811468_54835778	0/0	t0013	540	1	0	0	0	0	1	copy fasta	KIR3DL1	chr19	54811468	54835778
KIR3DL1_chr19_54811468_54835778	0/0	t0014	537	1	0	0	0	0	1	copy fasta	KIR3DL1	chr19	54811468	54835778
KIR3DL1_chr19_54811468_54835778	0/0	t0015	537	1	0	1	0	0	0	copy fasta	KIR3DL1	chr19	54811468	54835778
KIR3DL1_chr19_54811468_54835778	0/0	t0016	537	1	0	1	0	0	0	copy fasta	KIR3DL1	chr19	54811468	54835778
KIR3DL2_chr19_54845443_54872207	0/1	t0001	510	231	48	40	100	6	36	copy fasta	KIR3DL2	chr19	54845443	54872207
KIR3DL2_chr19_54845443_54872207	0/0	t0002	510	159	37	32	68	11	11	copy fasta	KIR3DL2	chr19	54845443	54872207
KIR3DL2_chr19_54845443_54872207	0/0	t0003	510	37	5	2	27	1	2	copy fasta	KIR3DL2	chr19	54845443	54872207
KIR3DL2_chr19_54845443_54872207	0/0	t0004	510	6	0	0	5	0	1	copy fasta	KIR3DL2	chr19	54845443	54872207
KIR3DL2_chr19_54845443_54872207	0/0	t0005	510	3	2	1	0	0	0	copy fasta	KIR3DL2	chr19	54845443	54872207
KIR3DL2_chr19_54845443_54872207	0/0	t0006	510	2	2	0	0	0	0	copy fasta	KIR3DL2	chr19	54845443	54872207
KIR3DL2_chr19_54845443_54872207	0/0	t0007	34	1	0	1	0	0	0	copy fasta	KIR3DL2	chr19	54845443	54872207
KIR3DL2_chr19_54845443_54872207	0/0	t0008	510	1	1	0	0	0	0	copy fasta	KIR3DL2	chr19	54845443	54872207
KIR3DL2_chr19_54845443_54872207	0/0	t0009	510	1	1	0	0	0	0	copy fasta	KIR3DL2	chr19	54845443	54872207
KIR3DL3_chr19_54719442_54741632	0/0	t0001	592	281	41	40	177	5	18	copy fasta	KIR3DL3	chr19	54719442	54741632
KIR3DL3_chr19_54719442_54741632	0/1	t0002	616	94	24	23	22	8	16	copy fasta	KIR3DL3	chr19	54719442	54741632
KIR3DL3_chr19_54719442_54741632	0/0	t0003	592	66	14	14	22	5	11	copy fasta	KIR3DL3	chr19	54719442	54741632
KIR3DL3_chr19_54719442_54741632	0/0	t0004	612	18	16	1	0	0	1	copy fasta	KIR3DL3	chr19	54719442	54741632
KIR3DL3_chr19_54719442_54741632	0/0	t0005	612	2	2	0	0	0	0	copy fasta	KIR3DL3	chr19	54719442	54741632
KIR3DL3_chr19_54719442_54741632	0/0	t0006	592	2	0	0	2	0	0	copy fasta	KIR3DL3	chr19	54719442	54741632
KIR3DL3_chr19_54719442_54741632	0/0	t0007	592	2	0	0	2	0	0	copy fasta	KIR3DL3	chr19	54719442	54741632
KIR3DL3_chr19_54719442_54741632	0/0	t0008	592	1	0	0	1	0	0	copy fasta	KIR3DL3	chr19	54719442	54741632