JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KIR3DL3_chr19_54719442_54741632	0/0	t0009	616	1	1	0	0	0	0	copy fasta	KIR3DL3	chr19	54719442	54741632
KIRREL1_chr1_157988645_158105262	0/0	t0001	5174	62	1	12	40	4	5	copy fasta	KIRREL1	chr1	157988645	158105262
KIRREL1_chr1_157988645_158105262	0/0	t0002	5175	52	9	15	26	1	1	copy fasta	KIRREL1	chr1	157988645	158105262
KIRREL1_chr1_157988645_158105262	0/0	t0003	5174	42	0	7	24	0	11	copy fasta	KIRREL1	chr1	157988645	158105262
KIRREL1_chr1_157988645_158105262	0/0	t0004	5175	13	11	1	1	0	0	copy fasta	KIRREL1	chr1	157988645	158105262
KIRREL1_chr1_157988645_158105262	0/0	t0005	5175	12	4	1	3	1	3	copy fasta	KIRREL1	chr1	157988645	158105262
KIRREL1_chr1_157988645_158105262	0/0	t0006	5175	12	2	3	1	2	4	copy fasta	KIRREL1	chr1	157988645	158105262
KIRREL1_chr1_157988645_158105262	0/0	t0007	5174	11	11	0	0	0	0	copy fasta	KIRREL1	chr1	157988645	158105262
KIRREL1_chr1_157988645_158105262	0/0	t0008	5175	10	9	1	0	0	0	copy fasta	KIRREL1	chr1	157988645	158105262
KIRREL1_chr1_157988645_158105262	0/0	t0009	5173	7	0	1	3	0	3	copy fasta	KIRREL1	chr1	157988645	158105262
KIRREL1_chr1_157988645_158105262	0/1	t0010	5174	5	0	2	1	0	1	copy fasta	KIRREL1	chr1	157988645	158105262
KIRREL1_chr1_157988645_158105262	0/0	t0011	5175	5	5	0	0	0	0	copy fasta	KIRREL1	chr1	157988645	158105262
KIRREL1_chr1_157988645_158105262	0/0	t0012	5174	4	3	1	0	0	0	copy fasta	KIRREL1	chr1	157988645	158105262
KIRREL1_chr1_157988645_158105262	0/0	t0013	5175	3	3	0	0	0	0	copy fasta	KIRREL1	chr1	157988645	158105262
KIRREL1_chr1_157988645_158105262	0/0	t0014	5175	3	0	1	1	1	0	copy fasta	KIRREL1	chr1	157988645	158105262
KIRREL1_chr1_157988645_158105262	0/0	t0015	5175	3	3	0	0	0	0	copy fasta	KIRREL1	chr1	157988645	158105262
KIRREL1_chr1_157988645_158105262	0/0	t0016	5175	3	0	1	0	2	0	copy fasta	KIRREL1	chr1	157988645	158105262
KIRREL1_chr1_157988645_158105262	0/0	t0017	5175	2	2	0	0	0	0	copy fasta	KIRREL1	chr1	157988645	158105262
KIRREL1_chr1_157988645_158105262	0/0	t0018	5175	2	2	0	0	0	0	copy fasta	KIRREL1	chr1	157988645	158105262
KIRREL1_chr1_157988645_158105262	0/0	t0019	5175	2	2	0	0	0	0	copy fasta	KIRREL1	chr1	157988645	158105262
KIRREL1_chr1_157988645_158105262	0/0	t0020	5175	2	2	0	0	0	0	copy fasta	KIRREL1	chr1	157988645	158105262
KIRREL1_chr1_157988645_158105262	0/0	t0021	5175	2	2	0	0	0	0	copy fasta	KIRREL1	chr1	157988645	158105262
KIRREL1_chr1_157988645_158105262	1/0	t0022	5175	2	0	0	1	0	0	copy fasta	KIRREL1	chr1	157988645	158105262
KIRREL1_chr1_157988645_158105262	0/0	t0023	5174	2	2	0	0	0	0	copy fasta	KIRREL1	chr1	157988645	158105262
KIRREL1_chr1_157988645_158105262	0/0	t0024	5174	2	2	0	0	0	0	copy fasta	KIRREL1	chr1	157988645	158105262
KIRREL1_chr1_157988645_158105262	0/0	t0025	5174	2	0	1	1	0	0	copy fasta	KIRREL1	chr1	157988645	158105262
KIRREL1_chr1_157988645_158105262	0/0	t0026	5174	2	0	0	2	0	0	copy fasta	KIRREL1	chr1	157988645	158105262
KIRREL1_chr1_157988645_158105262	0/0	t0027	5175	1	0	0	1	0	0	copy fasta	KIRREL1	chr1	157988645	158105262
KIRREL1_chr1_157988645_158105262	0/0	t0028	5174	1	0	0	1	0	0	copy fasta	KIRREL1	chr1	157988645	158105262
KIRREL1_chr1_157988645_158105262	0/0	t0029	5175	1	0	0	0	0	1	copy fasta	KIRREL1	chr1	157988645	158105262
KIRREL1_chr1_157988645_158105262	0/0	t0030	5173	1	0	0	0	1	0	copy fasta	KIRREL1	chr1	157988645	158105262
KIRREL1_chr1_157988645_158105262	0/0	t0031	5175	1	1	0	0	0	0	copy fasta	KIRREL1	chr1	157988645	158105262
KIRREL1_chr1_157988645_158105262	0/0	t0032	5175	1	0	0	1	0	0	copy fasta	KIRREL1	chr1	157988645	158105262
KIRREL1_chr1_157988645_158105262	0/0	t0033	5173	1	0	0	0	0	1	copy fasta	KIRREL1	chr1	157988645	158105262
KIRREL1_chr1_157988645_158105262	0/0	t0034	5175	1	0	0	1	0	0	copy fasta	KIRREL1	chr1	157988645	158105262
KIRREL1_chr1_157988645_158105262	0/0	t0035	5175	1	1	0	0	0	0	copy fasta	KIRREL1	chr1	157988645	158105262
KIRREL1_chr1_157988645_158105262	0/0	t0036	5175	1	0	1	0	0	0	copy fasta	KIRREL1	chr1	157988645	158105262
KIRREL1_chr1_157988645_158105262	0/0	t0037	5173	1	1	0	0	0	0	copy fasta	KIRREL1	chr1	157988645	158105262
KIRREL1_chr1_157988645_158105262	0/0	t0038	5175	1	1	0	0	0	0	copy fasta	KIRREL1	chr1	157988645	158105262
KIRREL1_chr1_157988645_158105262	0/0	t0039	5175	1	1	0	0	0	0	copy fasta	KIRREL1	chr1	157988645	158105262
KIRREL1_chr1_157988645_158105262	0/0	t0040	5174	1	1	0	0	0	0	copy fasta	KIRREL1	chr1	157988645	158105262
KIRREL1_chr1_157988645_158105262	0/0	t0041	5174	1	0	0	1	0	0	copy fasta	KIRREL1	chr1	157988645	158105262
KIRREL1_chr1_157988645_158105262	0/0	t0042	5174	1	0	0	1	0	0	copy fasta	KIRREL1	chr1	157988645	158105262
KIRREL1_chr1_157988645_158105262	0/0	t0043	5174	1	0	0	1	0	0	copy fasta	KIRREL1	chr1	157988645	158105262
KIRREL1_chr1_157988645_158105262	0/0	t0044	5174	1	0	0	0	0	1	copy fasta	KIRREL1	chr1	157988645	158105262
KIRREL1_chr1_157988645_158105262	0/0	t0045	5174	1	0	0	1	0	0	copy fasta	KIRREL1	chr1	157988645	158105262
KIRREL1_chr1_157988645_158105262	0/0	t0046	5175	1	1	0	0	0	0	copy fasta	KIRREL1	chr1	157988645	158105262
KIRREL1_chr1_157988645_158105262	0/0	t0047	5253	1	0	0	0	0	1	copy fasta	KIRREL1	chr1	157988645	158105262
KIRREL2_chr19_35851911_35872136	1/1	t0001	854	326	80	72	115	14	43	copy fasta	KIRREL2	chr19	35851911	35872136
KIRREL2_chr19_35851911_35872136	0/0	t0002	854	8	8	0	0	0	0	copy fasta	KIRREL2	chr19	35851911	35872136