JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KIRREL2_chr19_35851911_35872136	0/0	t0003	854	1	0	0	0	0	1	copy fasta	KIRREL2	chr19	35851911	35872136
KIRREL2_chr19_35851911_35872136	0/0	t0004	854	1	1	0	0	0	0	copy fasta	KIRREL2	chr19	35851911	35872136
KIRREL2_chr19_35851911_35872136	0/0	t0005	854	1	0	0	1	0	0	copy fasta	KIRREL2	chr19	35851911	35872136
KIRREL2_chr19_35851911_35872136	0/0	t0006	854	1	1	0	0	0	0	copy fasta	KIRREL2	chr19	35851911	35872136
KIRREL2_chr19_35851911_35872136	0/0	t0007	854	1	1	0	0	0	0	copy fasta	KIRREL2	chr19	35851911	35872136
KIRREL2_chr19_35851911_35872136	0/0	t0008	854	1	1	0	0	0	0	copy fasta	KIRREL2	chr19	35851911	35872136
KIRREL3_chr11_126418358_127005770	0/0	t0001	1484	17	4	9	0	2	2	copy fasta	KIRREL3	chr11	126418358	127005770
KIRREL3_chr11_126418358_127005770	0/0	t0002	1484	15	5	4	4	0	2	copy fasta	KIRREL3	chr11	126418358	127005770
KIRREL3_chr11_126418358_127005770	0/0	t0003	1484	7	0	4	0	3	0	copy fasta	KIRREL3	chr11	126418358	127005770
KIRREL3_chr11_126418358_127005770	0/0	t0004	1484	7	4	2	0	1	0	copy fasta	KIRREL3	chr11	126418358	127005770
KIRREL3_chr11_126418358_127005770	0/0	t0005	1484	5	1	0	4	0	0	copy fasta	KIRREL3	chr11	126418358	127005770
KIRREL3_chr11_126418358_127005770	0/0	t0006	1484	5	2	2	1	0	0	copy fasta	KIRREL3	chr11	126418358	127005770
KIRREL3_chr11_126418358_127005770	0/0	t0007	1484	4	1	2	0	0	1	copy fasta	KIRREL3	chr11	126418358	127005770
KIRREL3_chr11_126418358_127005770	0/0	t0008	1484	4	4	0	0	0	0	copy fasta	KIRREL3	chr11	126418358	127005770
KIRREL3_chr11_126418358_127005770	0/0	t0009	1484	3	3	0	0	0	0	copy fasta	KIRREL3	chr11	126418358	127005770
KIRREL3_chr11_126418358_127005770	0/0	t0010	1484	3	3	0	0	0	0	copy fasta	KIRREL3	chr11	126418358	127005770
KIRREL3_chr11_126418358_127005770	0/0	t0011	1484	2	1	1	0	0	0	copy fasta	KIRREL3	chr11	126418358	127005770
KIRREL3_chr11_126418358_127005770	0/0	t0012	1484	2	2	0	0	0	0	copy fasta	KIRREL3	chr11	126418358	127005770
KIRREL3_chr11_126418358_127005770	0/0	t0013	1484	2	0	0	2	0	0	copy fasta	KIRREL3	chr11	126418358	127005770
KIRREL3_chr11_126418358_127005770	0/0	t0014	1484	2	2	0	0	0	0	copy fasta	KIRREL3	chr11	126418358	127005770
KIRREL3_chr11_126418358_127005770	0/0	t0015	1484	2	0	1	1	0	0	copy fasta	KIRREL3	chr11	126418358	127005770
KIRREL3_chr11_126418358_127005770	0/0	t0016	1484	2	0	0	0	2	0	copy fasta	KIRREL3	chr11	126418358	127005770
KIRREL3_chr11_126418358_127005770	0/0	t0017	1484	2	0	1	0	1	0	copy fasta	KIRREL3	chr11	126418358	127005770
KIRREL3_chr11_126418358_127005770	0/0	t0018	1484	2	2	0	0	0	0	copy fasta	KIRREL3	chr11	126418358	127005770
KIRREL3_chr11_126418358_127005770	0/0	t0019	1484	1	0	1	0	0	0	copy fasta	KIRREL3	chr11	126418358	127005770
KIRREL3_chr11_126418358_127005770	0/0	t0020	1484	1	1	0	0	0	0	copy fasta	KIRREL3	chr11	126418358	127005770
KIRREL3_chr11_126418358_127005770	0/0	t0021	1484	1	1	0	0	0	0	copy fasta	KIRREL3	chr11	126418358	127005770
KIRREL3_chr11_126418358_127005770	0/0	t0022	1484	1	0	0	1	0	0	copy fasta	KIRREL3	chr11	126418358	127005770
KIRREL3_chr11_126418358_127005770	0/0	t0023	1484	1	1	0	0	0	0	copy fasta	KIRREL3	chr11	126418358	127005770
KIRREL3_chr11_126418358_127005770	0/0	t0024	1484	1	1	0	0	0	0	copy fasta	KIRREL3	chr11	126418358	127005770
KIRREL3_chr11_126418358_127005770	0/0	t0025	1484	1	1	0	0	0	0	copy fasta	KIRREL3	chr11	126418358	127005770
KIRREL3_chr11_126418358_127005770	0/0	t0026	1484	1	1	0	0	0	0	copy fasta	KIRREL3	chr11	126418358	127005770
KIRREL3_chr11_126418358_127005770	0/0	t0027	1484	1	0	0	0	1	0	copy fasta	KIRREL3	chr11	126418358	127005770
KIRREL3_chr11_126418358_127005770	0/0	t0028	1484	1	1	0	0	0	0	copy fasta	KIRREL3	chr11	126418358	127005770
KIRREL3_chr11_126418358_127005770	0/0	t0029	1484	1	0	1	0	0	0	copy fasta	KIRREL3	chr11	126418358	127005770
KIRREL3_chr11_126418358_127005770	0/0	t0030	1484	1	0	0	1	0	0	copy fasta	KIRREL3	chr11	126418358	127005770
KIRREL3_chr11_126418358_127005770	0/0	t0031	1484	1	1	0	0	0	0	copy fasta	KIRREL3	chr11	126418358	127005770
KIRREL3_chr11_126418358_127005770	0/0	t0032	1484	1	0	0	1	0	0	copy fasta	KIRREL3	chr11	126418358	127005770
KIRREL3_chr11_126418358_127005770	0/0	t0033	1484	1	1	0	0	0	0	copy fasta	KIRREL3	chr11	126418358	127005770
KIRREL3_chr11_126418358_127005770	0/0	t0034	1484	1	1	0	0	0	0	copy fasta	KIRREL3	chr11	126418358	127005770
KIRREL3_chr11_126418358_127005770	0/0	t0035	1484	1	0	0	0	0	1	copy fasta	KIRREL3	chr11	126418358	127005770
KIRREL3_chr11_126418358_127005770	0/0	t0036	1484	1	0	1	0	0	0	copy fasta	KIRREL3	chr11	126418358	127005770
KIRREL3_chr11_126418358_127005770	0/0	t0037	1484	1	1	0	0	0	0	copy fasta	KIRREL3	chr11	126418358	127005770
KIRREL3_chr11_126418358_127005770	0/0	t0038	1484	1	1	0	0	0	0	copy fasta	KIRREL3	chr11	126418358	127005770
KIRREL3_chr11_126418358_127005770	0/0	t0039	1484	1	1	0	0	0	0	copy fasta	KIRREL3	chr11	126418358	127005770
KIRREL3_chr11_126418358_127005770	0/0	t0040	1484	1	1	0	0	0	0	copy fasta	KIRREL3	chr11	126418358	127005770
KIRREL3_chr11_126418358_127005770	0/0	t0041	1484	1	0	0	1	0	0	copy fasta	KIRREL3	chr11	126418358	127005770
KIRREL3_chr11_126418358_127005770	0/0	t0042	1484	1	0	1	0	0	0	copy fasta	KIRREL3	chr11	126418358	127005770
KIRREL3_chr11_126418358_127005770	0/0	t0043	1484	1	0	0	0	1	0	copy fasta	KIRREL3	chr11	126418358	127005770
KIRREL3_chr11_126418358_127005770	0/0	t0044	1484	1	0	0	0	1	0	copy fasta	KIRREL3	chr11	126418358	127005770