JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KIRREL3_chr11_126418358_127005770	0/0	t0045	1484	1	1	0	0	0	0	copy fasta	KIRREL3	chr11	126418358	127005770
KIRREL3_chr11_126418358_127005770	0/0	t0046	1484	1	1	0	0	0	0	copy fasta	KIRREL3	chr11	126418358	127005770
KISS1R_chr19_912333_926005	1/1	t0001	428	390	82	74	164	18	50	copy fasta	KISS1R	chr19	912333	926005
KISS1R_chr19_912333_926005	0/0	t0002	428	16	16	0	0	0	0	copy fasta	KISS1R	chr19	912333	926005
KISS1R_chr19_912333_926005	0/0	t0003	428	9	0	0	9	0	0	copy fasta	KISS1R	chr19	912333	926005
KISS1R_chr19_912333_926005	0/0	t0004	428	1	0	0	1	0	0	copy fasta	KISS1R	chr19	912333	926005
KISS1_chr1_204185341_204201491	1/1	t0001	298	161	9	42	70	10	28	copy fasta	KISS1	chr1	204185341	204201491
KISS1_chr1_204185341_204201491	0/0	t0002	298	100	6	17	74	2	1	copy fasta	KISS1	chr1	204185341	204201491
KISS1_chr1_204185341_204201491	0/0	t0003	297	21	8	2	8	0	3	copy fasta	KISS1	chr1	204185341	204201491
KISS1_chr1_204185341_204201491	0/0	t0004	299	20	2	6	5	2	5	copy fasta	KISS1	chr1	204185341	204201491
KISS1_chr1_204185341_204201491	0/0	t0005	298	18	8	4	4	1	1	copy fasta	KISS1	chr1	204185341	204201491
KISS1_chr1_204185341_204201491	0/0	t0006	298	18	17	0	0	0	1	copy fasta	KISS1	chr1	204185341	204201491
KISS1_chr1_204185341_204201491	0/0	t0007	299	14	13	1	0	0	0	copy fasta	KISS1	chr1	204185341	204201491
KISS1_chr1_204185341_204201491	0/0	t0008	297	12	11	0	1	0	0	copy fasta	KISS1	chr1	204185341	204201491
KISS1_chr1_204185341_204201491	0/0	t0009	300	7	4	2	1	0	0	copy fasta	KISS1	chr1	204185341	204201491
KISS1_chr1_204185341_204201491	0/0	t0010	299	6	3	1	2	0	0	copy fasta	KISS1	chr1	204185341	204201491
KISS1_chr1_204185341_204201491	0/0	t0011	298	4	2	0	0	0	2	copy fasta	KISS1	chr1	204185341	204201491
KISS1_chr1_204185341_204201491	0/0	t0012	299	4	3	0	0	1	0	copy fasta	KISS1	chr1	204185341	204201491
KISS1_chr1_204185341_204201491	0/0	t0013	297	3	1	1	0	0	1	copy fasta	KISS1	chr1	204185341	204201491
KISS1_chr1_204185341_204201491	0/0	t0014	299	2	1	0	1	0	0	copy fasta	KISS1	chr1	204185341	204201491
KISS1_chr1_204185341_204201491	0/0	t0015	298	1	1	0	0	0	0	copy fasta	KISS1	chr1	204185341	204201491
KISS1_chr1_204185341_204201491	0/0	t0016	318	1	1	0	0	0	0	copy fasta	KISS1	chr1	204185341	204201491
KISS1_chr1_204185341_204201491	0/0	t0017	297	1	1	0	0	0	0	copy fasta	KISS1	chr1	204185341	204201491
KISS1_chr1_204185341_204201491	0/0	t0018	299	1	1	0	0	0	0	copy fasta	KISS1	chr1	204185341	204201491
KISS1_chr1_204185341_204201491	0/0	t0019	298	1	1	0	0	0	0	copy fasta	KISS1	chr1	204185341	204201491
KISS1_chr1_204185341_204201491	0/0	t0020	299	1	1	0	0	0	0	copy fasta	KISS1	chr1	204185341	204201491
KISS1_chr1_204185341_204201491	0/0	t0021	319	1	1	0	0	0	0	copy fasta	KISS1	chr1	204185341	204201491
KISS1_chr1_204185341_204201491	0/0	t0022	299	1	0	0	1	0	0	copy fasta	KISS1	chr1	204185341	204201491
KISS1_chr1_204185341_204201491	0/0	t0023	311	1	0	0	1	0	0	copy fasta	KISS1	chr1	204185341	204201491
KISS1_chr1_204185341_204201491	0/0	t0024	300	1	1	0	0	0	0	copy fasta	KISS1	chr1	204185341	204201491
KITLG_chr12_88487793_88585471	0/1	t0001	4620	65	9	9	39	2	5	copy fasta	KITLG	chr12	88487793	88585471
KITLG_chr12_88487793_88585471	1/0	t0002	4620	57	26	4	20	1	5	copy fasta	KITLG	chr12	88487793	88585471
KITLG_chr12_88487793_88585471	0/0	t0003	4620	44	6	1	36	0	1	copy fasta	KITLG	chr12	88487793	88585471
KITLG_chr12_88487793_88585471	0/0	t0004	4620	15	3	5	5	1	1	copy fasta	KITLG	chr12	88487793	88585471
KITLG_chr12_88487793_88585471	0/0	t0005	4620	9	9	0	0	0	0	copy fasta	KITLG	chr12	88487793	88585471
KITLG_chr12_88487793_88585471	0/0	t0006	4620	6	0	0	6	0	0	copy fasta	KITLG	chr12	88487793	88585471
KITLG_chr12_88487793_88585471	0/0	t0007	4620	6	5	0	0	0	1	copy fasta	KITLG	chr12	88487793	88585471
KITLG_chr12_88487793_88585471	0/0	t0008	4620	4	0	2	0	1	1	copy fasta	KITLG	chr12	88487793	88585471
KITLG_chr12_88487793_88585471	0/0	t0009	4620	4	4	0	0	0	0	copy fasta	KITLG	chr12	88487793	88585471
KITLG_chr12_88487793_88585471	0/0	t0010	4620	4	4	0	0	0	0	copy fasta	KITLG	chr12	88487793	88585471
KITLG_chr12_88487793_88585471	0/0	t0011	4620	2	1	1	0	0	0	copy fasta	KITLG	chr12	88487793	88585471
KITLG_chr12_88487793_88585471	0/0	t0012	4620	2	2	0	0	0	0	copy fasta	KITLG	chr12	88487793	88585471
KITLG_chr12_88487793_88585471	0/0	t0013	4620	2	2	0	0	0	0	copy fasta	KITLG	chr12	88487793	88585471
KITLG_chr12_88487793_88585471	0/0	t0014	4620	2	2	0	0	0	0	copy fasta	KITLG	chr12	88487793	88585471
KITLG_chr12_88487793_88585471	0/0	t0015	4620	2	2	0	0	0	0	copy fasta	KITLG	chr12	88487793	88585471
KITLG_chr12_88487793_88585471	0/0	t0016	4620	1	1	0	0	0	0	copy fasta	KITLG	chr12	88487793	88585471
KITLG_chr12_88487793_88585471	0/0	t0017	4620	1	0	0	0	0	1	copy fasta	KITLG	chr12	88487793	88585471
KITLG_chr12_88487793_88585471	0/0	t0018	4620	1	0	1	0	0	0	copy fasta	KITLG	chr12	88487793	88585471
KITLG_chr12_88487793_88585471	0/0	t0019	4620	1	0	1	0	0	0	copy fasta	KITLG	chr12	88487793	88585471
KITLG_chr12_88487793_88585471	0/0	t0020	4620	1	0	0	1	0	0	copy fasta	KITLG	chr12	88487793	88585471