JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KITLG_chr12_88487793_88585471	0/0	t0021	4620	1	0	0	1	0	0	copy fasta	KITLG	chr12	88487793	88585471
KITLG_chr12_88487793_88585471	0/0	t0022	4620	1	1	0	0	0	0	copy fasta	KITLG	chr12	88487793	88585471
KITLG_chr12_88487793_88585471	0/0	t0023	4620	1	0	0	0	1	0	copy fasta	KITLG	chr12	88487793	88585471
KITLG_chr12_88487793_88585471	0/0	t0024	4620	1	0	0	0	0	1	copy fasta	KITLG	chr12	88487793	88585471
KITLG_chr12_88487793_88585471	0/0	t0025	4620	1	1	0	0	0	0	copy fasta	KITLG	chr12	88487793	88585471
KITLG_chr12_88487793_88585471	0/0	t0026	4620	1	1	0	0	0	0	copy fasta	KITLG	chr12	88487793	88585471
KITLG_chr12_88487793_88585471	0/0	t0027	4620	1	1	0	0	0	0	copy fasta	KITLG	chr12	88487793	88585471
KITLG_chr12_88487793_88585471	0/0	t0028	4620	1	1	0	0	0	0	copy fasta	KITLG	chr12	88487793	88585471
KITLG_chr12_88487793_88585471	0/0	t0029	4620	1	1	0	0	0	0	copy fasta	KITLG	chr12	88487793	88585471
KITLG_chr12_88487793_88585471	0/0	t0030	4620	1	1	0	0	0	0	copy fasta	KITLG	chr12	88487793	88585471
KITLG_chr12_88487793_88585471	0/0	t0031	4620	1	1	0	0	0	0	copy fasta	KITLG	chr12	88487793	88585471
KIT_chr4_54652957_54745715	1/0	t0001	2217	178	35	48	73	3	18	copy fasta	KIT	chr4	54652957	54745715
KIT_chr4_54652957_54745715	0/1	t0002	2217	34	9	6	10	1	7	copy fasta	KIT	chr4	54652957	54745715
KIT_chr4_54652957_54745715	0/0	t0003	2217	27	10	5	8	1	3	copy fasta	KIT	chr4	54652957	54745715
KIT_chr4_54652957_54745715	0/0	t0004	2217	11	9	1	0	0	1	copy fasta	KIT	chr4	54652957	54745715
KIT_chr4_54652957_54745715	0/0	t0005	2216	3	3	0	0	0	0	copy fasta	KIT	chr4	54652957	54745715
KIT_chr4_54652957_54745715	0/0	t0006	2217	3	3	0	0	0	0	copy fasta	KIT	chr4	54652957	54745715
KIT_chr4_54652957_54745715	0/0	t0007	2217	2	2	0	0	0	0	copy fasta	KIT	chr4	54652957	54745715
KIT_chr4_54652957_54745715	0/0	t0008	2217	2	2	0	0	0	0	copy fasta	KIT	chr4	54652957	54745715
KIT_chr4_54652957_54745715	0/0	t0009	2217	2	0	0	0	1	1	copy fasta	KIT	chr4	54652957	54745715
KIT_chr4_54652957_54745715	0/0	t0010	2217	1	0	0	0	0	1	copy fasta	KIT	chr4	54652957	54745715
KIT_chr4_54652957_54745715	0/0	t0011	2217	1	1	0	0	0	0	copy fasta	KIT	chr4	54652957	54745715
KIT_chr4_54652957_54745715	0/0	t0012	2217	1	1	0	0	0	0	copy fasta	KIT	chr4	54652957	54745715
KIT_chr4_54652957_54745715	0/0	t0013	2217	1	0	0	0	0	1	copy fasta	KIT	chr4	54652957	54745715
KIT_chr4_54652957_54745715	0/0	t0014	2217	1	1	0	0	0	0	copy fasta	KIT	chr4	54652957	54745715
KIT_chr4_54652957_54745715	0/0	t0015	2217	1	0	0	1	0	0	copy fasta	KIT	chr4	54652957	54745715
KIZ_chr20_21121082_21251622	1/1	t0001	81	314	88	46	134	14	30	copy fasta	KIZ	chr20	21121082	21251622
KLB_chr4_39401930_39456533	1/0	t0001	2868	82	24	9	45	2	1	copy fasta	KLB	chr4	39401930	39456533
KLB_chr4_39401930_39456533	0/1	t0002	2870	73	1	23	33	4	11	copy fasta	KLB	chr4	39401930	39456533
KLB_chr4_39401930_39456533	0/0	t0003	2870	62	4	12	35	1	10	copy fasta	KLB	chr4	39401930	39456533
KLB_chr4_39401930_39456533	0/0	t0004	2865	23	22	1	0	0	0	copy fasta	KLB	chr4	39401930	39456533
KLB_chr4_39401930_39456533	0/0	t0005	2866	21	0	9	6	2	4	copy fasta	KLB	chr4	39401930	39456533
KLB_chr4_39401930_39456533	0/0	t0006	2863	20	0	2	17	1	0	copy fasta	KLB	chr4	39401930	39456533
KLB_chr4_39401930_39456533	0/0	t0007	2869	17	4	3	7	0	3	copy fasta	KLB	chr4	39401930	39456533
KLB_chr4_39401930_39456533	0/0	t0008	2866	11	8	2	0	1	0	copy fasta	KLB	chr4	39401930	39456533
KLB_chr4_39401930_39456533	0/0	t0009	2869	9	0	1	3	2	3	copy fasta	KLB	chr4	39401930	39456533
KLB_chr4_39401930_39456533	0/0	t0010	2871	8	3	3	2	0	0	copy fasta	KLB	chr4	39401930	39456533
KLB_chr4_39401930_39456533	0/0	t0011	2867	6	0	4	2	0	0	copy fasta	KLB	chr4	39401930	39456533
KLB_chr4_39401930_39456533	0/0	t0012	2866	4	4	0	0	0	0	copy fasta	KLB	chr4	39401930	39456533
KLB_chr4_39401930_39456533	0/0	t0013	2868	3	2	1	0	0	0	copy fasta	KLB	chr4	39401930	39456533
KLB_chr4_39401930_39456533	0/0	t0014	2865	3	3	0	0	0	0	copy fasta	KLB	chr4	39401930	39456533
KLB_chr4_39401930_39456533	0/0	t0015	2871	3	0	1	1	0	1	copy fasta	KLB	chr4	39401930	39456533
KLB_chr4_39401930_39456533	0/0	t0016	2865	3	2	1	0	0	0	copy fasta	KLB	chr4	39401930	39456533
KLB_chr4_39401930_39456533	0/0	t0017	2865	2	0	2	0	0	0	copy fasta	KLB	chr4	39401930	39456533
KLB_chr4_39401930_39456533	0/0	t0018	2868	2	1	1	0	0	0	copy fasta	KLB	chr4	39401930	39456533
KLB_chr4_39401930_39456533	0/0	t0019	2868	2	0	0	2	0	0	copy fasta	KLB	chr4	39401930	39456533
KLB_chr4_39401930_39456533	0/0	t0020	2867	2	0	0	2	0	0	copy fasta	KLB	chr4	39401930	39456533
KLB_chr4_39401930_39456533	0/0	t0021	2870	2	0	1	0	0	1	copy fasta	KLB	chr4	39401930	39456533
KLB_chr4_39401930_39456533	0/0	t0022	2868	1	1	0	0	0	0	copy fasta	KLB	chr4	39401930	39456533
KLB_chr4_39401930_39456533	0/0	t0023	2865	1	1	0	0	0	0	copy fasta	KLB	chr4	39401930	39456533