JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KLB_chr4_39401930_39456533	0/0	t0024	2870	1	0	0	0	1	0	copy fasta	KLB	chr4	39401930	39456533
KLB_chr4_39401930_39456533	0/0	t0025	2865	1	1	0	0	0	0	copy fasta	KLB	chr4	39401930	39456533
KLB_chr4_39401930_39456533	0/0	t0026	2869	1	0	0	1	0	0	copy fasta	KLB	chr4	39401930	39456533
KLB_chr4_39401930_39456533	0/0	t0027	2870	1	0	1	0	0	0	copy fasta	KLB	chr4	39401930	39456533
KLB_chr4_39401930_39456533	0/0	t0028	2871	1	0	0	0	0	1	copy fasta	KLB	chr4	39401930	39456533
KLB_chr4_39401930_39456533	0/0	t0029	2870	1	0	0	0	0	1	copy fasta	KLB	chr4	39401930	39456533
KLB_chr4_39401930_39456533	0/0	t0030	2870	1	1	0	0	0	0	copy fasta	KLB	chr4	39401930	39456533
KLB_chr4_39401930_39456533	0/0	t0031	2870	1	0	1	0	0	0	copy fasta	KLB	chr4	39401930	39456533
KLB_chr4_39401930_39456533	0/0	t0032	2868	1	0	0	1	0	0	copy fasta	KLB	chr4	39401930	39456533
KLB_chr4_39401930_39456533	0/0	t0033	2868	1	1	0	0	0	0	copy fasta	KLB	chr4	39401930	39456533
KLB_chr4_39401930_39456533	0/0	t0034	2868	1	0	0	1	0	0	copy fasta	KLB	chr4	39401930	39456533
KLB_chr4_39401930_39456533	0/0	t0035	2868	1	0	0	0	0	1	copy fasta	KLB	chr4	39401930	39456533
KLB_chr4_39401930_39456533	0/0	t0036	2868	1	1	0	0	0	0	copy fasta	KLB	chr4	39401930	39456533
KLB_chr4_39401930_39456533	0/0	t0037	2867	1	0	0	1	0	0	copy fasta	KLB	chr4	39401930	39456533
KLB_chr4_39401930_39456533	0/0	t0038	2863	1	1	0	0	0	0	copy fasta	KLB	chr4	39401930	39456533
KLB_chr4_39401930_39456533	0/0	t0039	2864	1	1	0	0	0	0	copy fasta	KLB	chr4	39401930	39456533
KLB_chr4_39401930_39456533	0/0	t0040	2871	1	0	0	0	0	1	copy fasta	KLB	chr4	39401930	39456533
KLB_chr4_39401930_39456533	0/0	t0041	2870	1	0	0	1	0	0	copy fasta	KLB	chr4	39401930	39456533
KLB_chr4_39401930_39456533	0/0	t0042	2870	1	1	0	0	0	0	copy fasta	KLB	chr4	39401930	39456533
KLB_chr4_39401930_39456533	0/0	t0043	2867	1	1	0	0	0	0	copy fasta	KLB	chr4	39401930	39456533
KLC1_chr14_103624211_103706544	1/0	t0001	629	164	38	33	72	3	17	copy fasta	KLC1	chr14	103624211	103706544
KLC1_chr14_103624211_103706544	0/0	t0002	629	94	10	14	56	3	11	copy fasta	KLC1	chr14	103624211	103706544
KLC1_chr14_103624211_103706544	0/1	t0003	629	67	19	18	12	6	11	copy fasta	KLC1	chr14	103624211	103706544
KLC1_chr14_103624211_103706544	0/0	t0004	629	13	12	1	0	0	0	copy fasta	KLC1	chr14	103624211	103706544
KLC1_chr14_103624211_103706544	0/0	t0005	629	12	0	5	4	0	3	copy fasta	KLC1	chr14	103624211	103706544
KLC1_chr14_103624211_103706544	0/0	t0006	629	7	7	0	0	0	0	copy fasta	KLC1	chr14	103624211	103706544
KLC1_chr14_103624211_103706544	0/0	t0007	629	2	0	0	2	0	0	copy fasta	KLC1	chr14	103624211	103706544
KLC1_chr14_103624211_103706544	0/0	t0008	629	2	1	0	1	0	0	copy fasta	KLC1	chr14	103624211	103706544
KLC1_chr14_103624211_103706544	0/0	t0009	629	1	0	1	0	0	0	copy fasta	KLC1	chr14	103624211	103706544
KLC1_chr14_103624211_103706544	0/0	t0010	629	1	0	0	1	0	0	copy fasta	KLC1	chr14	103624211	103706544
KLC1_chr14_103624211_103706544	0/0	t0011	629	1	0	0	0	0	1	copy fasta	KLC1	chr14	103624211	103706544
KLC1_chr14_103624211_103706544	0/0	t0012	629	1	0	0	0	0	1	copy fasta	KLC1	chr14	103624211	103706544
KLC1_chr14_103624211_103706544	0/0	t0013	629	1	1	0	0	0	0	copy fasta	KLC1	chr14	103624211	103706544
KLC1_chr14_103624211_103706544	0/0	t0014	629	1	1	0	0	0	0	copy fasta	KLC1	chr14	103624211	103706544
KLC1_chr14_103624211_103706544	0/0	t0015	629	1	1	0	0	0	0	copy fasta	KLC1	chr14	103624211	103706544
KLC2_chr11_66252703_66272860	0/1	t0001	1084	348	76	62	158	12	39	copy fasta	KLC2	chr11	66252703	66272860
KLC2_chr11_66252703_66272860	0/0	t0002	1084	20	0	1	19	0	0	copy fasta	KLC2	chr11	66252703	66272860
KLC2_chr11_66252703_66272860	0/0	t0003	1083	7	6	1	0	0	0	copy fasta	KLC2	chr11	66252703	66272860
KLC2_chr11_66252703_66272860	0/0	t0004	1084	5	0	3	2	0	0	copy fasta	KLC2	chr11	66252703	66272860
KLC2_chr11_66252703_66272860	0/0	t0005	1084	3	0	2	0	0	1	copy fasta	KLC2	chr11	66252703	66272860
KLC2_chr11_66252703_66272860	0/0	t0006	1084	2	2	0	0	0	0	copy fasta	KLC2	chr11	66252703	66272860
KLC2_chr11_66252703_66272860	0/0	t0007	1084	2	2	0	0	0	0	copy fasta	KLC2	chr11	66252703	66272860
KLC2_chr11_66252703_66272860	0/0	t0008	1084	1	1	0	0	0	0	copy fasta	KLC2	chr11	66252703	66272860
KLC2_chr11_66252703_66272860	0/0	t0009	1084	1	1	0	0	0	0	copy fasta	KLC2	chr11	66252703	66272860
KLC2_chr11_66252703_66272860	1/0	t0010	1085	1	0	0	0	0	0	copy fasta	KLC2	chr11	66252703	66272860
KLC2_chr11_66252703_66272860	0/0	t0011	1084	1	1	0	0	0	0	copy fasta	KLC2	chr11	66252703	66272860
KLC2_chr11_66252703_66272860	0/0	t0012	1084	1	0	1	0	0	0	copy fasta	KLC2	chr11	66252703	66272860
KLC2_chr11_66252703_66272860	0/0	t0013	1084	1	0	0	1	0	0	copy fasta	KLC2	chr11	66252703	66272860
KLC2_chr11_66252703_66272860	0/0	t0014	1084	1	0	0	1	0	0	copy fasta	KLC2	chr11	66252703	66272860
KLC2_chr11_66252703_66272860	0/0	t0015	1084	1	1	0	0	0	0	copy fasta	KLC2	chr11	66252703	66272860