JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KLC2_chr11_66252703_66272860	0/0	t0016	1084	1	0	0	1	0	0	copy fasta	KLC2	chr11	66252703	66272860
KLC3_chr19_45335750_45356519	1/1	t0001	268	427	98	74	192	17	44	copy fasta	KLC3	chr19	45335750	45356519
KLC3_chr19_45335750_45356519	0/0	t0002	268	4	0	1	0	1	2	copy fasta	KLC3	chr19	45335750	45356519
KLC3_chr19_45335750_45356519	0/0	t0003	268	1	0	0	1	0	0	copy fasta	KLC3	chr19	45335750	45356519
KLC3_chr19_45335750_45356519	0/0	t0004	268	1	0	0	1	0	0	copy fasta	KLC3	chr19	45335750	45356519
KLC3_chr19_45335750_45356519	0/0	t0005	268	1	0	1	0	0	0	copy fasta	KLC3	chr19	45335750	45356519
KLC4_chr6_43054631_43080093	1/1	t0001	502	336	92	62	136	10	34	copy fasta	KLC4	chr6	43054631	43080093
KLC4_chr6_43054631_43080093	0/0	t0002	502	4	1	3	0	0	0	copy fasta	KLC4	chr6	43054631	43080093
KLC4_chr6_43054631_43080093	0/0	t0003	502	1	1	0	0	0	0	copy fasta	KLC4	chr6	43054631	43080093
KLC4_chr6_43054631_43080093	0/0	t0004	502	1	0	1	0	0	0	copy fasta	KLC4	chr6	43054631	43080093
KLF10_chr8_102643784_102660725	1/1	t0001	1473	183	22	34	96	10	19	copy fasta	KLF10	chr8	102643784	102660725
KLF10_chr8_102643784_102660725	0/0	t0002	1467	105	7	15	78	0	5	copy fasta	KLF10	chr8	102643784	102660725
KLF10_chr8_102643784_102660725	0/0	t0003	1467	92	16	20	34	6	16	copy fasta	KLF10	chr8	102643784	102660725
KLF10_chr8_102643784_102660725	0/0	t0004	1467	44	31	2	6	0	5	copy fasta	KLF10	chr8	102643784	102660725
KLF10_chr8_102643784_102660725	0/0	t0005	1467	10	0	7	0	2	1	copy fasta	KLF10	chr8	102643784	102660725
KLF10_chr8_102643784_102660725	0/0	t0006	1467	9	9	0	0	0	0	copy fasta	KLF10	chr8	102643784	102660725
KLF10_chr8_102643784_102660725	0/0	t0007	1467	4	0	2	0	0	2	copy fasta	KLF10	chr8	102643784	102660725
KLF10_chr8_102643784_102660725	0/0	t0008	1467	3	3	0	0	0	0	copy fasta	KLF10	chr8	102643784	102660725
KLF10_chr8_102643784_102660725	0/0	t0009	1467	1	0	0	1	0	0	copy fasta	KLF10	chr8	102643784	102660725
KLF10_chr8_102643784_102660725	0/0	t0010	1467	1	1	0	0	0	0	copy fasta	KLF10	chr8	102643784	102660725
KLF10_chr8_102643784_102660725	0/0	t0011	1467	1	1	0	0	0	0	copy fasta	KLF10	chr8	102643784	102660725
KLF10_chr8_102643784_102660725	0/0	t0012	1467	1	1	0	0	0	0	copy fasta	KLF10	chr8	102643784	102660725
KLF10_chr8_102643784_102660725	0/0	t0013	1467	1	1	0	0	0	0	copy fasta	KLF10	chr8	102643784	102660725
KLF10_chr8_102643784_102660725	0/0	t0014	1467	1	0	0	1	0	0	copy fasta	KLF10	chr8	102643784	102660725
KLF11_chr2_10038550_10059836	0/1	t0001	2499	193	13	44	107	9	19	copy fasta	KLF11	chr2	10038550	10059836
KLF11_chr2_10038550_10059836	1/0	t0002	2497	67	13	11	35	1	6	copy fasta	KLF11	chr2	10038550	10059836
KLF11_chr2_10038550_10059836	0/0	t0003	2495	43	4	3	26	0	10	copy fasta	KLF11	chr2	10038550	10059836
KLF11_chr2_10038550_10059836	0/0	t0004	2496	22	20	1	1	0	0	copy fasta	KLF11	chr2	10038550	10059836
KLF11_chr2_10038550_10059836	0/0	t0005	2494	13	2	6	1	2	2	copy fasta	KLF11	chr2	10038550	10059836
KLF11_chr2_10038550_10059836	0/0	t0006	2478	11	10	1	0	0	0	copy fasta	KLF11	chr2	10038550	10059836
KLF11_chr2_10038550_10059836	0/0	t0007	2499	11	9	2	0	0	0	copy fasta	KLF11	chr2	10038550	10059836
KLF11_chr2_10038550_10059836	0/0	t0008	2478	8	0	2	0	4	2	copy fasta	KLF11	chr2	10038550	10059836
KLF11_chr2_10038550_10059836	0/0	t0009	2499	3	3	0	0	0	0	copy fasta	KLF11	chr2	10038550	10059836
KLF11_chr2_10038550_10059836	0/0	t0010	2498	3	1	0	1	0	1	copy fasta	KLF11	chr2	10038550	10059836
KLF11_chr2_10038550_10059836	0/0	t0011	2497	3	3	0	0	0	0	copy fasta	KLF11	chr2	10038550	10059836
KLF11_chr2_10038550_10059836	0/0	t0012	2499	3	3	0	0	0	0	copy fasta	KLF11	chr2	10038550	10059836
KLF11_chr2_10038550_10059836	0/0	t0013	2499	3	3	0	0	0	0	copy fasta	KLF11	chr2	10038550	10059836
KLF11_chr2_10038550_10059836	0/0	t0014	2494	2	2	0	0	0	0	copy fasta	KLF11	chr2	10038550	10059836
KLF11_chr2_10038550_10059836	0/0	t0015	2494	2	2	0	0	0	0	copy fasta	KLF11	chr2	10038550	10059836
KLF11_chr2_10038550_10059836	0/0	t0016	2495	2	0	2	0	0	0	copy fasta	KLF11	chr2	10038550	10059836
KLF11_chr2_10038550_10059836	0/0	t0017	2497	2	0	0	0	0	2	copy fasta	KLF11	chr2	10038550	10059836
KLF11_chr2_10038550_10059836	0/0	t0018	2497	2	2	0	0	0	0	copy fasta	KLF11	chr2	10038550	10059836
KLF11_chr2_10038550_10059836	0/0	t0019	2499	2	0	0	2	0	0	copy fasta	KLF11	chr2	10038550	10059836
KLF11_chr2_10038550_10059836	0/0	t0020	2478	2	1	1	0	0	0	copy fasta	KLF11	chr2	10038550	10059836
KLF11_chr2_10038550_10059836	0/0	t0021	2496	1	1	0	0	0	0	copy fasta	KLF11	chr2	10038550	10059836
KLF11_chr2_10038550_10059836	0/0	t0022	2495	1	0	0	0	0	1	copy fasta	KLF11	chr2	10038550	10059836
KLF11_chr2_10038550_10059836	0/0	t0023	2496	1	0	0	1	0	0	copy fasta	KLF11	chr2	10038550	10059836
KLF11_chr2_10038550_10059836	0/0	t0024	2494	1	1	0	0	0	0	copy fasta	KLF11	chr2	10038550	10059836
KLF11_chr2_10038550_10059836	0/0	t0025	2478	1	0	1	0	0	0	copy fasta	KLF11	chr2	10038550	10059836
KLF11_chr2_10038550_10059836	0/0	t0026	2495	1	0	1	0	0	0	copy fasta	KLF11	chr2	10038550	10059836