JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KLF11_chr2_10038550_10059836	0/0	t0027	2495	1	0	0	1	0	0	copy fasta	KLF11	chr2	10038550	10059836
KLF11_chr2_10038550_10059836	0/0	t0028	2495	1	1	0	0	0	0	copy fasta	KLF11	chr2	10038550	10059836
KLF11_chr2_10038550_10059836	0/0	t0029	2480	1	1	0	0	0	0	copy fasta	KLF11	chr2	10038550	10059836
KLF11_chr2_10038550_10059836	0/0	t0030	2500	1	1	0	0	0	0	copy fasta	KLF11	chr2	10038550	10059836
KLF11_chr2_10038550_10059836	0/0	t0031	2499	1	0	0	1	0	0	copy fasta	KLF11	chr2	10038550	10059836
KLF11_chr2_10038550_10059836	0/0	t0032	2497	1	1	0	0	0	0	copy fasta	KLF11	chr2	10038550	10059836
KLF11_chr2_10038550_10059836	0/0	t0033	2497	1	0	0	1	0	0	copy fasta	KLF11	chr2	10038550	10059836
KLF11_chr2_10038550_10059836	0/0	t0034	2497	1	0	0	0	0	1	copy fasta	KLF11	chr2	10038550	10059836
KLF11_chr2_10038550_10059836	0/0	t0035	2499	1	0	0	1	0	0	copy fasta	KLF11	chr2	10038550	10059836
KLF11_chr2_10038550_10059836	0/0	t0036	2499	1	0	1	0	0	0	copy fasta	KLF11	chr2	10038550	10059836
KLF11_chr2_10038550_10059836	0/0	t0037	2499	1	1	0	0	0	0	copy fasta	KLF11	chr2	10038550	10059836
KLF12_chr13_73681089_74139404	0/0	t0001	9866	24	8	10	2	0	4	copy fasta	KLF12	chr13	73681089	74139404
KLF12_chr13_73681089_74139404	0/0	t0002	9867	12	1	4	1	1	5	copy fasta	KLF12	chr13	73681089	74139404
KLF12_chr13_73681089_74139404	0/1	t0003	9866	11	6	1	3	0	0	copy fasta	KLF12	chr13	73681089	74139404
KLF12_chr13_73681089_74139404	0/0	t0004	9866	10	4	3	0	0	3	copy fasta	KLF12	chr13	73681089	74139404
KLF12_chr13_73681089_74139404	0/0	t0005	9867	3	2	1	0	0	0	copy fasta	KLF12	chr13	73681089	74139404
KLF12_chr13_73681089_74139404	0/0	t0006	9866	3	2	1	0	0	0	copy fasta	KLF12	chr13	73681089	74139404
KLF12_chr13_73681089_74139404	0/0	t0007	9866	3	0	1	0	0	2	copy fasta	KLF12	chr13	73681089	74139404
KLF12_chr13_73681089_74139404	0/0	t0008	9866	3	3	0	0	0	0	copy fasta	KLF12	chr13	73681089	74139404
KLF12_chr13_73681089_74139404	0/0	t0009	9867	2	0	2	0	0	0	copy fasta	KLF12	chr13	73681089	74139404
KLF12_chr13_73681089_74139404	0/0	t0010	9867	2	2	0	0	0	0	copy fasta	KLF12	chr13	73681089	74139404
KLF12_chr13_73681089_74139404	0/0	t0011	9867	2	0	1	0	0	1	copy fasta	KLF12	chr13	73681089	74139404
KLF12_chr13_73681089_74139404	0/0	t0012	9866	2	2	0	0	0	0	copy fasta	KLF12	chr13	73681089	74139404
KLF12_chr13_73681089_74139404	1/0	t0013	9866	2	1	0	0	0	0	copy fasta	KLF12	chr13	73681089	74139404
KLF12_chr13_73681089_74139404	0/0	t0014	9866	2	2	0	0	0	0	copy fasta	KLF12	chr13	73681089	74139404
KLF12_chr13_73681089_74139404	0/0	t0015	9866	1	1	0	0	0	0	copy fasta	KLF12	chr13	73681089	74139404
KLF12_chr13_73681089_74139404	0/0	t0016	9867	1	0	0	1	0	0	copy fasta	KLF12	chr13	73681089	74139404
KLF12_chr13_73681089_74139404	0/0	t0017	9867	1	1	0	0	0	0	copy fasta	KLF12	chr13	73681089	74139404
KLF12_chr13_73681089_74139404	0/0	t0018	9867	1	0	1	0	0	0	copy fasta	KLF12	chr13	73681089	74139404
KLF12_chr13_73681089_74139404	0/0	t0019	9867	1	0	0	0	0	1	copy fasta	KLF12	chr13	73681089	74139404
KLF12_chr13_73681089_74139404	0/0	t0020	9868	1	0	0	0	0	1	copy fasta	KLF12	chr13	73681089	74139404
KLF12_chr13_73681089_74139404	0/0	t0021	9867	1	0	1	0	0	0	copy fasta	KLF12	chr13	73681089	74139404
KLF12_chr13_73681089_74139404	0/0	t0022	9867	1	0	1	0	0	0	copy fasta	KLF12	chr13	73681089	74139404
KLF12_chr13_73681089_74139404	0/0	t0023	9867	1	1	0	0	0	0	copy fasta	KLF12	chr13	73681089	74139404
KLF12_chr13_73681089_74139404	0/0	t0024	9867	1	0	0	1	0	0	copy fasta	KLF12	chr13	73681089	74139404
KLF12_chr13_73681089_74139404	0/0	t0025	9867	1	1	0	0	0	0	copy fasta	KLF12	chr13	73681089	74139404
KLF12_chr13_73681089_74139404	0/0	t0026	9867	1	0	0	0	0	1	copy fasta	KLF12	chr13	73681089	74139404
KLF12_chr13_73681089_74139404	0/0	t0027	9867	1	0	1	0	0	0	copy fasta	KLF12	chr13	73681089	74139404
KLF12_chr13_73681089_74139404	0/0	t0028	9867	1	0	0	0	0	1	copy fasta	KLF12	chr13	73681089	74139404
KLF12_chr13_73681089_74139404	0/0	t0029	9866	1	0	0	0	0	1	copy fasta	KLF12	chr13	73681089	74139404
KLF12_chr13_73681089_74139404	0/0	t0030	9866	1	0	1	0	0	0	copy fasta	KLF12	chr13	73681089	74139404
KLF12_chr13_73681089_74139404	0/0	t0031	9866	1	1	0	0	0	0	copy fasta	KLF12	chr13	73681089	74139404
KLF12_chr13_73681089_74139404	0/0	t0032	9866	1	1	0	0	0	0	copy fasta	KLF12	chr13	73681089	74139404
KLF12_chr13_73681089_74139404	0/0	t0033	9866	1	0	0	1	0	0	copy fasta	KLF12	chr13	73681089	74139404
KLF12_chr13_73681089_74139404	0/0	t0034	9866	1	1	0	0	0	0	copy fasta	KLF12	chr13	73681089	74139404
KLF12_chr13_73681089_74139404	0/0	t0035	9866	1	1	0	0	0	0	copy fasta	KLF12	chr13	73681089	74139404
KLF12_chr13_73681089_74139404	0/0	t0036	9866	1	1	0	0	0	0	copy fasta	KLF12	chr13	73681089	74139404
KLF12_chr13_73681089_74139404	0/0	t0037	9866	1	1	0	0	0	0	copy fasta	KLF12	chr13	73681089	74139404
KLF12_chr13_73681089_74139404	0/0	t0038	9867	1	0	0	0	0	1	copy fasta	KLF12	chr13	73681089	74139404
KLF12_chr13_73681089_74139404	0/0	t0039	9867	1	0	0	0	0	1	copy fasta	KLF12	chr13	73681089	74139404