JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KLF12_chr13_73681089_74139404	0/0	t0040	9867	1	1	0	0	0	0	copy fasta	KLF12	chr13	73681089	74139404
KLF12_chr13_73681089_74139404	0/0	t0041	9866	1	1	0	0	0	0	copy fasta	KLF12	chr13	73681089	74139404
KLF12_chr13_73681089_74139404	0/0	t0042	9866	1	1	0	0	0	0	copy fasta	KLF12	chr13	73681089	74139404
KLF12_chr13_73681089_74139404	0/0	t0043	9866	1	1	0	0	0	0	copy fasta	KLF12	chr13	73681089	74139404
KLF12_chr13_73681089_74139404	0/0	t0044	9866	1	1	0	0	0	0	copy fasta	KLF12	chr13	73681089	74139404
KLF12_chr13_73681089_74139404	0/0	t0045	9866	1	1	0	0	0	0	copy fasta	KLF12	chr13	73681089	74139404
KLF12_chr13_73681089_74139404	0/0	t0046	9866	1	1	0	0	0	0	copy fasta	KLF12	chr13	73681089	74139404
KLF12_chr13_73681089_74139404	0/0	t0047	9866	1	0	1	0	0	0	copy fasta	KLF12	chr13	73681089	74139404
KLF12_chr13_73681089_74139404	0/0	t0048	9866	1	0	0	0	0	1	copy fasta	KLF12	chr13	73681089	74139404
KLF12_chr13_73681089_74139404	0/0	t0049	9866	1	0	0	0	0	1	copy fasta	KLF12	chr13	73681089	74139404
KLF12_chr13_73681089_74139404	0/0	t0050	9866	1	0	1	0	0	0	copy fasta	KLF12	chr13	73681089	74139404
KLF12_chr13_73681089_74139404	0/0	t0051	9866	1	0	0	1	0	0	copy fasta	KLF12	chr13	73681089	74139404
KLF12_chr13_73681089_74139404	0/0	t0052	9866	1	0	0	0	1	0	copy fasta	KLF12	chr13	73681089	74139404
KLF12_chr13_73681089_74139404	0/0	t0053	9866	1	0	1	0	0	0	copy fasta	KLF12	chr13	73681089	74139404
KLF13_chr15_31321835_31382899	0/1	t0001	5979	121	23	20	56	6	15	copy fasta	KLF13	chr15	31321835	31382899
KLF13_chr15_31321835_31382899	0/0	t0002	5985	58	1	15	28	3	11	copy fasta	KLF13	chr15	31321835	31382899
KLF13_chr15_31321835_31382899	0/0	t0003	5983	31	14	4	11	1	1	copy fasta	KLF13	chr15	31321835	31382899
KLF13_chr15_31321835_31382899	0/0	t0004	5982	28	2	13	12	1	0	copy fasta	KLF13	chr15	31321835	31382899
KLF13_chr15_31321835_31382899	0/0	t0005	5983	25	7	7	5	3	3	copy fasta	KLF13	chr15	31321835	31382899
KLF13_chr15_31321835_31382899	0/0	t0006	5983	23	0	4	19	0	0	copy fasta	KLF13	chr15	31321835	31382899
KLF13_chr15_31321835_31382899	0/0	t0007	5983	11	8	3	0	0	0	copy fasta	KLF13	chr15	31321835	31382899
KLF13_chr15_31321835_31382899	0/0	t0008	5979	10	0	0	10	0	0	copy fasta	KLF13	chr15	31321835	31382899
KLF13_chr15_31321835_31382899	0/0	t0009	5979	6	4	2	0	0	0	copy fasta	KLF13	chr15	31321835	31382899
KLF13_chr15_31321835_31382899	0/0	t0010	5985	6	0	0	6	0	0	copy fasta	KLF13	chr15	31321835	31382899
KLF13_chr15_31321835_31382899	0/0	t0011	5982	6	1	0	5	0	0	copy fasta	KLF13	chr15	31321835	31382899
KLF13_chr15_31321835_31382899	0/0	t0012	5983	4	0	0	4	0	0	copy fasta	KLF13	chr15	31321835	31382899
KLF13_chr15_31321835_31382899	0/0	t0013	5978	4	4	0	0	0	0	copy fasta	KLF13	chr15	31321835	31382899
KLF13_chr15_31321835_31382899	0/0	t0014	5982	4	4	0	0	0	0	copy fasta	KLF13	chr15	31321835	31382899
KLF13_chr15_31321835_31382899	0/0	t0015	5979	3	0	0	3	0	0	copy fasta	KLF13	chr15	31321835	31382899
KLF13_chr15_31321835_31382899	0/0	t0016	5981	3	0	1	0	0	2	copy fasta	KLF13	chr15	31321835	31382899
KLF13_chr15_31321835_31382899	0/0	t0017	5979	3	0	3	0	0	0	copy fasta	KLF13	chr15	31321835	31382899
KLF13_chr15_31321835_31382899	0/0	t0018	5985	3	0	0	3	0	0	copy fasta	KLF13	chr15	31321835	31382899
KLF13_chr15_31321835_31382899	0/0	t0019	5983	3	3	0	0	0	0	copy fasta	KLF13	chr15	31321835	31382899
KLF13_chr15_31321835_31382899	0/0	t0020	5979	2	0	0	2	0	0	copy fasta	KLF13	chr15	31321835	31382899
KLF13_chr15_31321835_31382899	0/0	t0021	5983	2	1	0	0	0	1	copy fasta	KLF13	chr15	31321835	31382899
KLF13_chr15_31321835_31382899	0/0	t0022	5978	2	2	0	0	0	0	copy fasta	KLF13	chr15	31321835	31382899
KLF13_chr15_31321835_31382899	0/0	t0023	5983	2	0	0	2	0	0	copy fasta	KLF13	chr15	31321835	31382899
KLF13_chr15_31321835_31382899	0/0	t0024	5983	2	1	1	0	0	0	copy fasta	KLF13	chr15	31321835	31382899
KLF13_chr15_31321835_31382899	0/0	t0025	5978	2	1	0	0	0	1	copy fasta	KLF13	chr15	31321835	31382899
KLF13_chr15_31321835_31382899	0/0	t0026	5978	2	2	0	0	0	0	copy fasta	KLF13	chr15	31321835	31382899
KLF13_chr15_31321835_31382899	0/0	t0027	5979	2	2	0	0	0	0	copy fasta	KLF13	chr15	31321835	31382899
KLF13_chr15_31321835_31382899	0/0	t0028	5979	1	0	0	1	0	0	copy fasta	KLF13	chr15	31321835	31382899
KLF13_chr15_31321835_31382899	0/0	t0029	5979	1	0	0	1	0	0	copy fasta	KLF13	chr15	31321835	31382899
KLF13_chr15_31321835_31382899	0/0	t0030	5982	1	0	0	1	0	0	copy fasta	KLF13	chr15	31321835	31382899
KLF13_chr15_31321835_31382899	0/0	t0031	5979	1	0	0	0	0	1	copy fasta	KLF13	chr15	31321835	31382899
KLF13_chr15_31321835_31382899	0/0	t0032	5983	1	1	0	0	0	0	copy fasta	KLF13	chr15	31321835	31382899
KLF13_chr15_31321835_31382899	0/0	t0033	5979	1	0	0	1	0	0	copy fasta	KLF13	chr15	31321835	31382899
KLF13_chr15_31321835_31382899	0/0	t0034	5979	1	0	0	1	0	0	copy fasta	KLF13	chr15	31321835	31382899
KLF13_chr15_31321835_31382899	0/0	t0035	5983	1	0	0	1	0	0	copy fasta	KLF13	chr15	31321835	31382899
KLF13_chr15_31321835_31382899	0/0	t0036	5927	1	0	1	0	0	0	copy fasta	KLF13	chr15	31321835	31382899