Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ABHD5_chr3_43685938_43727725	0/0	t0036	4249	1	0	0	0	0	1	copy fasta	ABHD5	chr3	43685938	43727725
ABHD5_chr3_43685938_43727725	0/0	t0037	4245	1	0	0	0	1	0	copy fasta	ABHD5	chr3	43685938	43727725
ABHD5_chr3_43685938_43727725	0/0	t0038	4248	1	0	0	0	0	1	copy fasta	ABHD5	chr3	43685938	43727725
ABHD6_chr3_58232792_58299734	0/0	t0001	1185	122	48	24	34	6	10	copy fasta	ABHD6	chr3	58232792	58299734
ABHD6_chr3_58232792_58299734	0/0	t0002	1185	84	2	18	50	1	13	copy fasta	ABHD6	chr3	58232792	58299734
ABHD6_chr3_58232792_58299734	0/0	t0003	1185	25	16	7	0	1	1	copy fasta	ABHD6	chr3	58232792	58299734
ABHD6_chr3_58232792_58299734	1/1	t0004	1185	23	7	9	0	0	5	copy fasta	ABHD6	chr3	58232792	58299734
ABHD6_chr3_58232792_58299734	0/0	t0005	1185	9	9	0	0	0	0	copy fasta	ABHD6	chr3	58232792	58299734
ABHD6_chr3_58232792_58299734	0/0	t0006	1185	9	3	3	0	0	3	copy fasta	ABHD6	chr3	58232792	58299734
ABHD6_chr3_58232792_58299734	0/0	t0007	1185	8	0	3	0	3	2	copy fasta	ABHD6	chr3	58232792	58299734
ABHD6_chr3_58232792_58299734	0/0	t0008	1186	6	6	0	0	0	0	copy fasta	ABHD6	chr3	58232792	58299734
ABHD6_chr3_58232792_58299734	0/0	t0009	1185	5	0	2	0	3	0	copy fasta	ABHD6	chr3	58232792	58299734
ABHD6_chr3_58232792_58299734	0/0	t0010	1185	2	0	0	2	0	0	copy fasta	ABHD6	chr3	58232792	58299734
ABHD6_chr3_58232792_58299734	0/0	t0011	1185	2	1	1	0	0	0	copy fasta	ABHD6	chr3	58232792	58299734
ABHD6_chr3_58232792_58299734	0/0	t0012	1185	1	0	0	1	0	0	copy fasta	ABHD6	chr3	58232792	58299734
ABHD6_chr3_58232792_58299734	0/0	t0013	1185	1	1	0	0	0	0	copy fasta	ABHD6	chr3	58232792	58299734
ABHD6_chr3_58232792_58299734	0/0	t0014	1185	1	0	0	0	0	1	copy fasta	ABHD6	chr3	58232792	58299734
ABHD6_chr3_58232792_58299734	0/0	t0015	1185	1	0	0	1	0	0	copy fasta	ABHD6	chr3	58232792	58299734
ABHD6_chr3_58232792_58299734	0/0	t0016	1185	1	1	0	0	0	0	copy fasta	ABHD6	chr3	58232792	58299734
ABHD6_chr3_58232792_58299734	0/0	t0017	1185	1	0	1	0	0	0	copy fasta	ABHD6	chr3	58232792	58299734
ABHD6_chr3_58232792_58299734	0/0	t0018	1185	1	0	0	0	0	1	copy fasta	ABHD6	chr3	58232792	58299734
ABHD8_chr19_17287131_17308425	1/1	t0001	723	176	12	37	109	5	11	copy fasta	ABHD8	chr19	17287131	17308425
ABHD8_chr19_17287131_17308425	0/0	t0002	723	68	35	9	21	2	1	copy fasta	ABHD8	chr19	17287131	17308425
ABHD8_chr19_17287131_17308425	0/0	t0003	723	49	10	4	19	2	14	copy fasta	ABHD8	chr19	17287131	17308425
ABHD8_chr19_17287131_17308425	0/0	t0004	723	30	15	7	0	3	5	copy fasta	ABHD8	chr19	17287131	17308425
ABHD8_chr19_17287131_17308425	0/0	t0005	724	19	15	1	3	0	0	copy fasta	ABHD8	chr19	17287131	17308425
ABHD8_chr19_17287131_17308425	0/0	t0006	724	17	2	5	6	0	4	copy fasta	ABHD8	chr19	17287131	17308425
ABHD8_chr19_17287131_17308425	0/0	t0007	724	10	0	3	3	0	4	copy fasta	ABHD8	chr19	17287131	17308425
ABHD8_chr19_17287131_17308425	0/0	t0008	723	6	3	2	0	1	0	copy fasta	ABHD8	chr19	17287131	17308425
ABHD8_chr19_17287131_17308425	0/0	t0009	723	2	2	0	0	0	0	copy fasta	ABHD8	chr19	17287131	17308425
ABHD8_chr19_17287131_17308425	0/0	t0010	723	1	0	0	0	0	1	copy fasta	ABHD8	chr19	17287131	17308425
ABHD8_chr19_17287131_17308425	0/0	t0011	723	1	1	0	0	0	0	copy fasta	ABHD8	chr19	17287131	17308425
ABHD8_chr19_17287131_17308425	0/0	t0012	724	1	0	1	0	0	0	copy fasta	ABHD8	chr19	17287131	17308425
ABHD8_chr19_17287131_17308425	0/0	t0013	723	1	1	0	0	0	0	copy fasta	ABHD8	chr19	17287131	17308425
ABHD8_chr19_17287131_17308425	0/0	t0014	723	1	1	0	0	0	0	copy fasta	ABHD8	chr19	17287131	17308425
ABHD8_chr19_17287131_17308425	0/0	t0015	723	1	0	0	1	0	0	copy fasta	ABHD8	chr19	17287131	17308425
ABHD8_chr19_17287131_17308425	0/0	t0016	724	1	0	1	0	0	0	copy fasta	ABHD8	chr19	17287131	17308425
ABHD8_chr19_17287131_17308425	0/0	t0017	723	1	0	0	0	1	0	copy fasta	ABHD8	chr19	17287131	17308425
ABHD8_chr19_17287131_17308425	0/0	t0018	724	1	1	0	0	0	0	copy fasta	ABHD8	chr19	17287131	17308425
ABI1_chr10_26741596_26865958	0/0	t0001	2075	118	23	25	54	6	10	copy fasta	ABI1	chr10	26741596	26865958
ABI1_chr10_26741596_26865958	1/1	t0002	2070	115	12	24	65	3	9	copy fasta	ABI1	chr10	26741596	26865958
ABI1_chr10_26741596_26865958	0/0	t0003	2075	61	13	5	35	1	7	copy fasta	ABI1	chr10	26741596	26865958
ABI1_chr10_26741596_26865958	0/0	t0004	2075	24	16	6	0	2	0	copy fasta	ABI1	chr10	26741596	26865958
ABI1_chr10_26741596_26865958	0/0	t0005	2074	15	0	0	15	0	0	copy fasta	ABI1	chr10	26741596	26865958
ABI1_chr10_26741596_26865958	0/0	t0006	2073	6	5	1	0	0	0	copy fasta	ABI1	chr10	26741596	26865958
ABI1_chr10_26741596_26865958	0/0	t0007	2078	6	1	2	0	0	3	copy fasta	ABI1	chr10	26741596	26865958
ABI1_chr10_26741596_26865958	0/0	t0008	2073	3	3	0	0	0	0	copy fasta	ABI1	chr10	26741596	26865958
ABI1_chr10_26741596_26865958	0/0	t0009	2075	2	0	0	0	0	2	copy fasta	ABI1	chr10	26741596	26865958
ABI1_chr10_26741596_26865958	0/0	t0010	2075	1	0	0	0	0	1	copy fasta	ABI1	chr10	26741596	26865958
ABI1_chr10_26741596_26865958	0/0	t0011	2075	1	0	1	0	0	0	copy fasta	ABI1	chr10	26741596	26865958