JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KLF13_chr15_31321835_31382899	0/0	t0037	5979	1	0	1	0	0	0	copy fasta	KLF13	chr15	31321835	31382899
KLF13_chr15_31321835_31382899	0/0	t0038	5979	1	0	0	1	0	0	copy fasta	KLF13	chr15	31321835	31382899
KLF13_chr15_31321835_31382899	0/0	t0039	5979	1	0	0	1	0	0	copy fasta	KLF13	chr15	31321835	31382899
KLF13_chr15_31321835_31382899	0/0	t0040	5983	1	1	0	0	0	0	copy fasta	KLF13	chr15	31321835	31382899
KLF13_chr15_31321835_31382899	0/0	t0041	5985	1	0	0	1	0	0	copy fasta	KLF13	chr15	31321835	31382899
KLF13_chr15_31321835_31382899	0/0	t0042	5979	1	1	0	0	0	0	copy fasta	KLF13	chr15	31321835	31382899
KLF13_chr15_31321835_31382899	0/0	t0043	5983	1	1	0	0	0	0	copy fasta	KLF13	chr15	31321835	31382899
KLF13_chr15_31321835_31382899	0/0	t0044	5983	1	0	1	0	0	0	copy fasta	KLF13	chr15	31321835	31382899
KLF13_chr15_31321835_31382899	0/0	t0045	5985	1	0	0	1	0	0	copy fasta	KLF13	chr15	31321835	31382899
KLF13_chr15_31321835_31382899	0/0	t0046	5983	1	1	0	0	0	0	copy fasta	KLF13	chr15	31321835	31382899
KLF13_chr15_31321835_31382899	0/0	t0047	5983	1	0	0	1	0	0	copy fasta	KLF13	chr15	31321835	31382899
KLF13_chr15_31321835_31382899	0/0	t0048	5979	1	1	0	0	0	0	copy fasta	KLF13	chr15	31321835	31382899
KLF13_chr15_31321835_31382899	0/0	t0049	5983	1	0	1	0	0	0	copy fasta	KLF13	chr15	31321835	31382899
KLF13_chr15_31321835_31382899	0/0	t0050	5983	1	0	0	0	0	1	copy fasta	KLF13	chr15	31321835	31382899
KLF13_chr15_31321835_31382899	0/0	t0051	5985	1	0	0	0	0	1	copy fasta	KLF13	chr15	31321835	31382899
KLF13_chr15_31321835_31382899	0/0	t0052	5985	1	0	1	0	0	0	copy fasta	KLF13	chr15	31321835	31382899
KLF13_chr15_31321835_31382899	0/0	t0053	5983	1	0	0	1	0	0	copy fasta	KLF13	chr15	31321835	31382899
KLF13_chr15_31321835_31382899	0/0	t0054	5983	1	1	0	0	0	0	copy fasta	KLF13	chr15	31321835	31382899
KLF13_chr15_31321835_31382899	0/0	t0055	5985	1	0	0	1	0	0	copy fasta	KLF13	chr15	31321835	31382899
KLF13_chr15_31321835_31382899	0/0	t0056	5985	1	0	0	1	0	0	copy fasta	KLF13	chr15	31321835	31382899
KLF13_chr15_31321835_31382899	0/0	t0057	5983	1	1	0	0	0	0	copy fasta	KLF13	chr15	31321835	31382899
KLF13_chr15_31321835_31382899	0/0	t0058	5983	1	0	1	0	0	0	copy fasta	KLF13	chr15	31321835	31382899
KLF13_chr15_31321835_31382899	0/0	t0059	5982	1	1	0	0	0	0	copy fasta	KLF13	chr15	31321835	31382899
KLF13_chr15_31321835_31382899	0/0	t0060	5982	1	0	0	1	0	0	copy fasta	KLF13	chr15	31321835	31382899
KLF13_chr15_31321835_31382899	0/0	t0061	5982	1	1	0	0	0	0	copy fasta	KLF13	chr15	31321835	31382899
KLF13_chr15_31321835_31382899	0/0	t0062	5982	1	0	0	1	0	0	copy fasta	KLF13	chr15	31321835	31382899
KLF13_chr15_31321835_31382899	0/0	t0063	5982	1	0	0	1	0	0	copy fasta	KLF13	chr15	31321835	31382899
KLF13_chr15_31321835_31382899	0/0	t0064	5985	1	0	0	0	0	1	copy fasta	KLF13	chr15	31321835	31382899
KLF13_chr15_31321835_31382899	0/0	t0065	5979	1	1	0	0	0	0	copy fasta	KLF13	chr15	31321835	31382899
KLF13_chr15_31321835_31382899	0/0	t0066	5979	1	0	1	0	0	0	copy fasta	KLF13	chr15	31321835	31382899
KLF13_chr15_31321835_31382899	0/0	t0067	5985	1	0	0	1	0	0	copy fasta	KLF13	chr15	31321835	31382899
KLF13_chr15_31321835_31382899	0/0	t0068	5979	1	1	0	0	0	0	copy fasta	KLF13	chr15	31321835	31382899
KLF14_chr7_130725697_130739207	0/1	t0001	2540	139	10	28	90	0	10	copy fasta	KLF14	chr7	130725697	130739207
KLF14_chr7_130725697_130739207	0/0	t0002	2540	100	20	15	60	1	4	copy fasta	KLF14	chr7	130725697	130739207
KLF14_chr7_130725697_130739207	1/0	t0003	2540	83	5	17	43	4	13	copy fasta	KLF14	chr7	130725697	130739207
KLF14_chr7_130725697_130739207	0/0	t0004	2540	30	12	3	1	6	8	copy fasta	KLF14	chr7	130725697	130739207
KLF14_chr7_130725697_130739207	0/0	t0005	2538	20	18	2	0	0	0	copy fasta	KLF14	chr7	130725697	130739207
KLF14_chr7_130725697_130739207	0/0	t0006	2540	20	15	4	0	1	0	copy fasta	KLF14	chr7	130725697	130739207
KLF14_chr7_130725697_130739207	0/0	t0007	2540	10	0	2	6	0	2	copy fasta	KLF14	chr7	130725697	130739207
KLF14_chr7_130725697_130739207	0/0	t0008	2540	7	3	2	0	0	2	copy fasta	KLF14	chr7	130725697	130739207
KLF14_chr7_130725697_130739207	0/0	t0009	2540	7	7	0	0	0	0	copy fasta	KLF14	chr7	130725697	130739207
KLF14_chr7_130725697_130739207	0/0	t0010	2540	4	0	1	0	2	1	copy fasta	KLF14	chr7	130725697	130739207
KLF14_chr7_130725697_130739207	0/0	t0011	2540	4	0	0	4	0	0	copy fasta	KLF14	chr7	130725697	130739207
KLF14_chr7_130725697_130739207	0/0	t0012	2540	2	0	0	0	0	2	copy fasta	KLF14	chr7	130725697	130739207
KLF14_chr7_130725697_130739207	0/0	t0013	2540	2	1	1	0	0	0	copy fasta	KLF14	chr7	130725697	130739207
KLF14_chr7_130725697_130739207	0/0	t0014	2540	1	0	0	0	0	1	copy fasta	KLF14	chr7	130725697	130739207
KLF14_chr7_130725697_130739207	0/0	t0015	2540	1	0	0	1	0	0	copy fasta	KLF14	chr7	130725697	130739207
KLF14_chr7_130725697_130739207	0/0	t0016	2540	1	0	1	0	0	0	copy fasta	KLF14	chr7	130725697	130739207
KLF14_chr7_130725697_130739207	0/0	t0017	2540	1	0	0	0	0	1	copy fasta	KLF14	chr7	130725697	130739207
KLF14_chr7_130725697_130739207	0/0	t0018	2540	1	1	0	0	0	0	copy fasta	KLF14	chr7	130725697	130739207