JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KLF14_chr7_130725697_130739207	0/0	t0019	2540	1	0	0	0	0	1	copy fasta	KLF14	chr7	130725697	130739207
KLF14_chr7_130725697_130739207	0/0	t0020	2540	1	0	0	1	0	0	copy fasta	KLF14	chr7	130725697	130739207
KLF14_chr7_130725697_130739207	0/0	t0021	2540	1	0	0	1	0	0	copy fasta	KLF14	chr7	130725697	130739207
KLF14_chr7_130725697_130739207	0/0	t0022	2540	1	0	0	0	0	1	copy fasta	KLF14	chr7	130725697	130739207
KLF14_chr7_130725697_130739207	0/0	t0023	2540	1	1	0	0	0	0	copy fasta	KLF14	chr7	130725697	130739207
KLF14_chr7_130725697_130739207	0/0	t0024	2540	1	0	0	0	0	1	copy fasta	KLF14	chr7	130725697	130739207
KLF14_chr7_130725697_130739207	0/0	t0025	2540	1	0	0	0	0	1	copy fasta	KLF14	chr7	130725697	130739207
KLF14_chr7_130725697_130739207	0/0	t0026	2538	1	1	0	0	0	0	copy fasta	KLF14	chr7	130725697	130739207
KLF14_chr7_130725697_130739207	0/0	t0027	2516	1	0	0	1	0	0	copy fasta	KLF14	chr7	130725697	130739207
KLF15_chr3_126337635_126362408	1/0	t0001	1290	61	8	18	24	3	7	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0002	1281	21	2	5	13	0	1	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0003	1289	13	0	5	4	1	3	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0004	1289	12	1	0	10	1	0	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0005	1290	11	4	0	3	0	4	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0006	1284	10	0	0	10	0	0	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0007	1290	9	1	1	7	0	0	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0008	1290	9	2	1	5	0	1	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0009	1291	9	1	2	5	1	0	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0010	1294	8	2	1	4	0	1	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0011	1292	6	1	0	3	1	1	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0012	1324	6	0	2	4	0	0	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0013	1290	5	4	1	0	0	0	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0014	1275	5	5	0	0	0	0	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0015	1290	5	0	1	4	0	0	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/1	t0016	1323	5	1	1	1	0	1	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0017	1290	4	0	2	0	2	0	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0018	1276	4	4	0	0	0	0	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0019	1277	4	4	0	0	0	0	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0020	1280	4	0	3	1	0	0	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0021	1290	4	0	0	3	0	1	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0022	1322	4	0	2	1	0	1	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0023	1288	3	0	3	0	0	0	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0024	1284	3	3	0	0	0	0	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0025	1291	3	3	0	0	0	0	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0026	1284	3	1	1	1	0	0	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0027	1289	3	2	0	1	0	0	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0028	1290	3	1	1	1	0	0	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0029	1289	3	3	0	0	0	0	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0030	1293	3	1	0	2	0	0	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0031	1291	3	0	0	3	0	0	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0032	1268	3	0	0	0	2	1	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0033	1326	3	0	0	1	0	2	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0034	1321	3	0	1	1	0	1	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0035	1289	2	1	1	0	0	0	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0036	1301	2	2	0	0	0	0	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0037	1288	2	1	1	0	0	0	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0038	1269	2	2	0	0	0	0	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0039	1279	2	2	0	0	0	0	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0040	1281	2	2	0	0	0	0	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0041	1288	2	0	0	1	0	1	copy fasta	KLF15	chr3	126337635	126362408