JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KLF15_chr3_126337635_126362408	0/0	t0042	1290	2	0	1	0	0	1	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0043	1297	2	0	1	0	1	0	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0044	1300	2	0	0	2	0	0	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0045	1311	2	0	1	1	0	0	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0046	1324	2	0	0	2	0	0	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0047	1325	2	0	0	2	0	0	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0048	1322	2	2	0	0	0	0	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0049	1322	2	2	0	0	0	0	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0050	1310	1	0	0	1	0	0	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0051	1309	1	0	0	1	0	0	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0052	1308	1	0	0	1	0	0	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0053	1270	1	1	0	0	0	0	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0054	1290	1	0	1	0	0	0	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0055	1290	1	1	0	0	0	0	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0056	1293	1	1	0	0	0	0	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0057	1297	1	1	0	0	0	0	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0058	1300	1	1	0	0	0	0	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0059	1290	1	1	0	0	0	0	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0060	1291	1	1	0	0	0	0	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0061	1326	1	0	0	1	0	0	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0062	1308	1	1	0	0	0	0	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0063	1327	1	0	0	1	0	0	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0064	1290	1	1	0	0	0	0	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0065	1290	1	0	1	0	0	0	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0066	1290	1	0	0	0	1	0	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0067	1290	1	0	1	0	0	0	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0068	1281	1	1	0	0	0	0	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0069	1291	1	1	0	0	0	0	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0070	1274	1	1	0	0	0	0	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0071	1290	1	0	0	0	0	1	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0072	1289	1	1	0	0	0	0	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0073	1289	1	0	1	0	0	0	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0074	1293	1	1	0	0	0	0	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0075	1307	1	1	0	0	0	0	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0076	1300	1	0	0	0	0	1	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0077	1301	1	0	1	0	0	0	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0078	1304	1	0	0	0	0	1	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0079	1305	1	0	1	0	0	0	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0080	1312	1	1	0	0	0	0	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0081	1311	1	0	1	0	0	0	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0082	1321	1	0	0	1	0	0	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0083	1319	1	0	0	1	0	0	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0084	1316	1	0	0	1	0	0	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0085	1327	1	0	0	0	0	1	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0086	1318	1	0	0	1	0	0	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0087	1316	1	0	0	1	0	0	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0088	1323	1	0	0	0	1	0	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0089	1323	1	0	0	1	0	0	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0090	1315	1	0	0	1	0	0	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0091	1316	1	0	0	0	0	1	copy fasta	KLF15	chr3	126337635	126362408