JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
KLF15_chr3_126337635_126362408	0/0	t0092	1312	1	0	0	1	0	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0093	1313	1	0	0	1	0	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0094	1312	1	0	0	1	0	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0095	1313	1	0	0	0	1	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0096	1312	1	0	0	1	0	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0097	1311	1	0	0	0	1	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0098	1310	1	0	0	1	0	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0099	1313	1	0	1	0	0	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0100	1311	1	0	0	1	0	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0101	1309	1	0	0	1	0	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0102	1307	1	0	0	1	0	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0103	1316	1	0	0	0	1	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0104	1318	1	0	0	1	0	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0105	1290	1	0	0	1	0	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0106	1316	1	0	0	0	1	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0107	1312	1	0	0	0	1	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0108	1279	1	0	0	0	1	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0109	1288	1	0	1	0	0	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0110	1290	1	1	0	0	0	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0111	1290	1	0	0	0	1	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0112	1290	1	0	0	0	1	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0113	1302	1	0	1	0	0	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0114	1303	1	0	0	0	1	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0115	1322	1	1	0	0	0	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0116	1328	1	0	0	1	0	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0117	1329	1	0	0	1	0	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0118	1324	1	0	0	1	0	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0119	1327	1	0	0	1	0	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0120	1324	1	0	0	1	0	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0121	1314	1	1	0	0	0	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0122	1312	1	1	0	0	0	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0123	1322	1	0	0	1	0	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0124	1326	1	0	0	1	0	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0125	1326	1	0	0	1	0	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0126	1324	1	0	0	1	0	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0127	1312	1	0	0	1	0	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0128	1324	1	0	1	0	0	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0129	1315	1	0	1	0	0	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0130	1324	1	0	1	0	0	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0131	1311	1	1	0	0	0	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0132	1324	1	0	1	0	0	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0133	1323	1	0	1	0	0	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0134	1323	1	0	0	1	0	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0135	1324	1	0	0	1	0	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0136	1323	1	0	0	1	0	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0137	1322	1	0	0	1	0	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0138	1354	1	0	0	0	1	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0139	1310	1	1	0	0	0	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0140	1322	1	1	0	0	0	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0141	1321	1	1	0	0	0	copy fasta	KLF15	chr3	126337635	126362408