JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KLF15_chr3_126337635_126362408	0/0	t0142	1319	1	0	1	0	0	0	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0143	1322	1	0	0	1	0	0	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0144	1321	1	0	0	1	0	0	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0145	1323	1	1	0	0	0	0	copy fasta	KLF15	chr3	126337635	126362408
KLF15_chr3_126337635_126362408	0/0	t0146	1288	1	1	0	0	0	0	copy fasta	KLF15	chr3	126337635	126362408
KLF16_chr19_1847399_1868579	0/0	t0001	2143	101	10	24	47	7	13	copy fasta	KLF16	chr19	1847399	1868579
KLF16_chr19_1847399_1868579	0/0	t0002	2142	99	10	25	51	1	12	copy fasta	KLF16	chr19	1847399	1868579
KLF16_chr19_1847399_1868579	1/1	t0003	2143	81	13	13	38	4	11	copy fasta	KLF16	chr19	1847399	1868579
KLF16_chr19_1847399_1868579	0/0	t0004	2142	21	6	3	10	0	2	copy fasta	KLF16	chr19	1847399	1868579
KLF16_chr19_1847399_1868579	0/0	t0005	2141	19	19	0	0	0	0	copy fasta	KLF16	chr19	1847399	1868579
KLF16_chr19_1847399_1868579	0/0	t0006	2143	12	0	1	11	0	0	copy fasta	KLF16	chr19	1847399	1868579
KLF16_chr19_1847399_1868579	0/0	t0007	2143	8	7	0	0	0	1	copy fasta	KLF16	chr19	1847399	1868579
KLF16_chr19_1847399_1868579	0/0	t0008	2142	7	7	0	0	0	0	copy fasta	KLF16	chr19	1847399	1868579
KLF16_chr19_1847399_1868579	0/0	t0009	2142	7	5	0	2	0	0	copy fasta	KLF16	chr19	1847399	1868579
KLF16_chr19_1847399_1868579	0/0	t0010	2142	4	2	2	0	0	0	copy fasta	KLF16	chr19	1847399	1868579
KLF16_chr19_1847399_1868579	0/0	t0011	2137	4	4	0	0	0	0	copy fasta	KLF16	chr19	1847399	1868579
KLF16_chr19_1847399_1868579	0/0	t0012	2142	4	0	0	4	0	0	copy fasta	KLF16	chr19	1847399	1868579
KLF16_chr19_1847399_1868579	0/0	t0013	2143	3	0	1	0	0	2	copy fasta	KLF16	chr19	1847399	1868579
KLF16_chr19_1847399_1868579	0/0	t0014	2143	2	0	0	2	0	0	copy fasta	KLF16	chr19	1847399	1868579
KLF16_chr19_1847399_1868579	0/0	t0015	2142	2	0	0	2	0	0	copy fasta	KLF16	chr19	1847399	1868579
KLF16_chr19_1847399_1868579	0/0	t0016	2142	2	2	0	0	0	0	copy fasta	KLF16	chr19	1847399	1868579
KLF16_chr19_1847399_1868579	0/0	t0017	2143	2	0	0	2	0	0	copy fasta	KLF16	chr19	1847399	1868579
KLF16_chr19_1847399_1868579	0/0	t0018	2143	2	0	2	0	0	0	copy fasta	KLF16	chr19	1847399	1868579
KLF16_chr19_1847399_1868579	0/0	t0019	2143	1	1	0	0	0	0	copy fasta	KLF16	chr19	1847399	1868579
KLF16_chr19_1847399_1868579	0/0	t0020	2143	1	0	0	1	0	0	copy fasta	KLF16	chr19	1847399	1868579
KLF16_chr19_1847399_1868579	0/0	t0021	2143	1	0	0	1	0	0	copy fasta	KLF16	chr19	1847399	1868579
KLF16_chr19_1847399_1868579	0/0	t0022	2142	1	0	0	1	0	0	copy fasta	KLF16	chr19	1847399	1868579
KLF16_chr19_1847399_1868579	0/0	t0023	2142	1	1	0	0	0	0	copy fasta	KLF16	chr19	1847399	1868579
KLF16_chr19_1847399_1868579	0/0	t0024	2142	1	0	0	1	0	0	copy fasta	KLF16	chr19	1847399	1868579
KLF16_chr19_1847399_1868579	0/0	t0025	2142	1	0	0	1	0	0	copy fasta	KLF16	chr19	1847399	1868579
KLF16_chr19_1847399_1868579	0/0	t0026	2142	1	0	1	0	0	0	copy fasta	KLF16	chr19	1847399	1868579
KLF16_chr19_1847399_1868579	0/0	t0027	2142	1	1	0	0	0	0	copy fasta	KLF16	chr19	1847399	1868579
KLF16_chr19_1847399_1868579	0/0	t0028	2142	1	0	0	1	0	0	copy fasta	KLF16	chr19	1847399	1868579
KLF16_chr19_1847399_1868579	0/0	t0029	2142	1	1	0	0	0	0	copy fasta	KLF16	chr19	1847399	1868579
KLF16_chr19_1847399_1868579	0/0	t0030	2143	1	1	0	0	0	0	copy fasta	KLF16	chr19	1847399	1868579
KLF16_chr19_1847399_1868579	0/0	t0031	2133	1	0	0	1	0	0	copy fasta	KLF16	chr19	1847399	1868579
KLF16_chr19_1847399_1868579	0/0	t0032	2143	1	0	1	0	0	0	copy fasta	KLF16	chr19	1847399	1868579
KLF16_chr19_1847399_1868579	0/0	t0033	2143	1	0	1	0	0	0	copy fasta	KLF16	chr19	1847399	1868579
KLF16_chr19_1847399_1868579	0/0	t0034	2143	1	0	0	0	0	1	copy fasta	KLF16	chr19	1847399	1868579
KLF16_chr19_1847399_1868579	0/0	t0035	2143	1	0	0	1	0	0	copy fasta	KLF16	chr19	1847399	1868579
KLF16_chr19_1847399_1868579	0/0	t0036	2143	1	0	0	1	0	0	copy fasta	KLF16	chr19	1847399	1868579
KLF17_chr1_44113821_44140140	1/0	t0001	1991	169	24	28	97	10	9	copy fasta	KLF17	chr1	44113821	44140140
KLF17_chr1_44113821_44140140	0/0	t0002	1991	147	35	30	61	3	18	copy fasta	KLF17	chr1	44113821	44140140
KLF17_chr1_44113821_44140140	0/1	t0003	1989	88	5	18	48	3	13	copy fasta	KLF17	chr1	44113821	44140140
KLF17_chr1_44113821_44140140	0/0	t0004	1991	8	7	1	0	0	0	copy fasta	KLF17	chr1	44113821	44140140
KLF17_chr1_44113821_44140140	0/0	t0005	1991	6	5	1	0	0	0	copy fasta	KLF17	chr1	44113821	44140140
KLF17_chr1_44113821_44140140	0/0	t0006	1989	5	5	0	0	0	0	copy fasta	KLF17	chr1	44113821	44140140
KLF17_chr1_44113821_44140140	0/0	t0007	1991	4	3	1	0	0	0	copy fasta	KLF17	chr1	44113821	44140140
KLF17_chr1_44113821_44140140	0/0	t0008	1991	4	0	4	0	0	0	copy fasta	KLF17	chr1	44113821	44140140
KLF17_chr1_44113821_44140140	0/0	t0009	1991	2	2	0	0	0	0	copy fasta	KLF17	chr1	44113821	44140140