JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KLF17_chr1_44113821_44140140	0/0	t0010	1991	2	2	0	0	0	0	copy fasta	KLF17	chr1	44113821	44140140
KLF17_chr1_44113821_44140140	0/0	t0011	1989	2	2	0	0	0	0	copy fasta	KLF17	chr1	44113821	44140140
KLF17_chr1_44113821_44140140	0/0	t0012	1991	1	0	0	1	0	0	copy fasta	KLF17	chr1	44113821	44140140
KLF17_chr1_44113821_44140140	0/0	t0013	1991	1	0	0	1	0	0	copy fasta	KLF17	chr1	44113821	44140140
KLF17_chr1_44113821_44140140	0/0	t0014	1991	1	0	0	0	0	1	copy fasta	KLF17	chr1	44113821	44140140
KLF17_chr1_44113821_44140140	0/0	t0015	1989	1	0	0	0	0	1	copy fasta	KLF17	chr1	44113821	44140140
KLF17_chr1_44113821_44140140	0/0	t0016	1991	1	1	0	0	0	0	copy fasta	KLF17	chr1	44113821	44140140
KLF17_chr1_44113821_44140140	0/0	t0017	1991	1	1	0	0	0	0	copy fasta	KLF17	chr1	44113821	44140140
KLF17_chr1_44113821_44140140	0/0	t0018	1989	1	0	1	0	0	0	copy fasta	KLF17	chr1	44113821	44140140
KLF1_chr19_12879422_12892201	1/1	t0001	525	339	68	74	140	18	37	copy fasta	KLF1	chr19	12879422	12892201
KLF1_chr19_12879422_12892201	0/0	t0002	525	25	24	1	0	0	0	copy fasta	KLF1	chr19	12879422	12892201
KLF1_chr19_12879422_12892201	0/0	t0003	525	3	0	0	3	0	0	copy fasta	KLF1	chr19	12879422	12892201
KLF1_chr19_12879422_12892201	0/0	t0004	525	2	1	1	0	0	0	copy fasta	KLF1	chr19	12879422	12892201
KLF1_chr19_12879422_12892201	0/0	t0005	525	1	0	0	1	0	0	copy fasta	KLF1	chr19	12879422	12892201
KLF1_chr19_12879422_12892201	0/0	t0006	525	1	0	0	0	0	1	copy fasta	KLF1	chr19	12879422	12892201
KLF1_chr19_12879422_12892201	0/0	t0007	525	1	1	0	0	0	0	copy fasta	KLF1	chr19	12879422	12892201
KLF2_chr19_16319826_16333685	0/0	t0001	1753	116	14	9	75	9	9	copy fasta	KLF2	chr19	16319826	16333685
KLF2_chr19_16319826_16333685	0/0	t0002	1755	85	6	22	50	1	6	copy fasta	KLF2	chr19	16319826	16333685
KLF2_chr19_16319826_16333685	0/1	t0003	1754	79	2	22	41	1	12	copy fasta	KLF2	chr19	16319826	16333685
KLF2_chr19_16319826_16333685	0/0	t0004	1754	58	27	12	8	1	10	copy fasta	KLF2	chr19	16319826	16333685
KLF2_chr19_16319826_16333685	0/0	t0005	1754	28	9	7	1	4	7	copy fasta	KLF2	chr19	16319826	16333685
KLF2_chr19_16319826_16333685	0/0	t0006	1755	9	9	0	0	0	0	copy fasta	KLF2	chr19	16319826	16333685
KLF2_chr19_16319826_16333685	0/0	t0007	1754	8	6	2	0	0	0	copy fasta	KLF2	chr19	16319826	16333685
KLF2_chr19_16319826_16333685	0/0	t0008	1754	7	7	0	0	0	0	copy fasta	KLF2	chr19	16319826	16333685
KLF2_chr19_16319826_16333685	0/0	t0009	1754	6	0	3	0	2	1	copy fasta	KLF2	chr19	16319826	16333685
KLF2_chr19_16319826_16333685	0/0	t0010	1748	6	0	0	6	0	0	copy fasta	KLF2	chr19	16319826	16333685
KLF2_chr19_16319826_16333685	1/0	t0011	1753	6	0	0	5	0	0	copy fasta	KLF2	chr19	16319826	16333685
KLF2_chr19_16319826_16333685	0/0	t0012	1754	5	0	0	5	0	0	copy fasta	KLF2	chr19	16319826	16333685
KLF2_chr19_16319826_16333685	0/0	t0013	1754	3	3	0	0	0	0	copy fasta	KLF2	chr19	16319826	16333685
KLF2_chr19_16319826_16333685	0/0	t0014	1754	3	3	0	0	0	0	copy fasta	KLF2	chr19	16319826	16333685
KLF2_chr19_16319826_16333685	0/0	t0015	1754	3	2	1	0	0	0	copy fasta	KLF2	chr19	16319826	16333685
KLF2_chr19_16319826_16333685	0/0	t0016	1754	3	3	0	0	0	0	copy fasta	KLF2	chr19	16319826	16333685
KLF2_chr19_16319826_16333685	0/0	t0017	1754	3	0	0	3	0	0	copy fasta	KLF2	chr19	16319826	16333685
KLF2_chr19_16319826_16333685	0/0	t0018	1755	2	2	0	0	0	0	copy fasta	KLF2	chr19	16319826	16333685
KLF2_chr19_16319826_16333685	0/0	t0019	1755	1	1	0	0	0	0	copy fasta	KLF2	chr19	16319826	16333685
KLF2_chr19_16319826_16333685	0/0	t0020	1754	1	1	0	0	0	0	copy fasta	KLF2	chr19	16319826	16333685
KLF2_chr19_16319826_16333685	0/0	t0021	1755	1	0	0	1	0	0	copy fasta	KLF2	chr19	16319826	16333685
KLF2_chr19_16319826_16333685	0/0	t0022	1755	1	0	0	0	0	1	copy fasta	KLF2	chr19	16319826	16333685
KLF2_chr19_16319826_16333685	0/0	t0023	1753	1	0	1	0	0	0	copy fasta	KLF2	chr19	16319826	16333685
KLF2_chr19_16319826_16333685	0/0	t0024	1753	1	0	0	1	0	0	copy fasta	KLF2	chr19	16319826	16333685
KLF2_chr19_16319826_16333685	0/0	t0025	1753	1	0	0	0	0	1	copy fasta	KLF2	chr19	16319826	16333685
KLF2_chr19_16319826_16333685	0/0	t0026	1754	1	0	0	1	0	0	copy fasta	KLF2	chr19	16319826	16333685
KLF2_chr19_16319826_16333685	0/0	t0027	1754	1	0	0	1	0	0	copy fasta	KLF2	chr19	16319826	16333685
KLF2_chr19_16319826_16333685	0/0	t0028	1754	1	0	0	1	0	0	copy fasta	KLF2	chr19	16319826	16333685
KLF2_chr19_16319826_16333685	0/0	t0029	1754	1	1	0	0	0	0	copy fasta	KLF2	chr19	16319826	16333685
KLF2_chr19_16319826_16333685	0/0	t0030	1753	1	0	0	1	0	0	copy fasta	KLF2	chr19	16319826	16333685
KLF2_chr19_16319826_16333685	0/0	t0031	1753	1	0	1	0	0	0	copy fasta	KLF2	chr19	16319826	16333685
KLF2_chr19_16319826_16333685	0/0	t0032	1754	1	0	0	0	0	1	copy fasta	KLF2	chr19	16319826	16333685
KLF3_chr4_38659199_38706517	1/0	t0001	4557	79	1	12	59	3	3	copy fasta	KLF3	chr4	38659199	38706517
KLF3_chr4_38659199_38706517	0/1	t0002	4561	60	2	14	36	1	6	copy fasta	KLF3	chr4	38659199	38706517