JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KLF3_chr4_38659199_38706517	0/0	t0003	4557	46	8	9	21	0	8	copy fasta	KLF3	chr4	38659199	38706517
KLF3_chr4_38659199_38706517	0/0	t0004	4557	38	25	2	6	0	5	copy fasta	KLF3	chr4	38659199	38706517
KLF3_chr4_38659199_38706517	0/0	t0005	4557	37	17	4	7	3	6	copy fasta	KLF3	chr4	38659199	38706517
KLF3_chr4_38659199_38706517	0/0	t0006	4557	27	0	19	0	4	4	copy fasta	KLF3	chr4	38659199	38706517
KLF3_chr4_38659199_38706517	0/0	t0007	4557	25	4	1	15	2	3	copy fasta	KLF3	chr4	38659199	38706517
KLF3_chr4_38659199_38706517	0/0	t0008	4557	15	0	5	7	0	3	copy fasta	KLF3	chr4	38659199	38706517
KLF3_chr4_38659199_38706517	0/0	t0009	4553	14	13	1	0	0	0	copy fasta	KLF3	chr4	38659199	38706517
KLF3_chr4_38659199_38706517	0/0	t0010	4557	10	0	0	9	0	1	copy fasta	KLF3	chr4	38659199	38706517
KLF3_chr4_38659199_38706517	0/0	t0011	4557	6	6	0	0	0	0	copy fasta	KLF3	chr4	38659199	38706517
KLF3_chr4_38659199_38706517	0/0	t0012	4557	4	3	1	0	0	0	copy fasta	KLF3	chr4	38659199	38706517
KLF3_chr4_38659199_38706517	0/0	t0013	4557	4	0	0	1	0	3	copy fasta	KLF3	chr4	38659199	38706517
KLF3_chr4_38659199_38706517	0/0	t0014	4557	3	0	0	3	0	0	copy fasta	KLF3	chr4	38659199	38706517
KLF3_chr4_38659199_38706517	0/0	t0015	4557	3	3	0	0	0	0	copy fasta	KLF3	chr4	38659199	38706517
KLF3_chr4_38659199_38706517	0/0	t0016	4561	2	0	0	2	0	0	copy fasta	KLF3	chr4	38659199	38706517
KLF3_chr4_38659199_38706517	0/0	t0017	4557	2	0	0	2	0	0	copy fasta	KLF3	chr4	38659199	38706517
KLF3_chr4_38659199_38706517	0/0	t0018	4557	2	0	0	1	0	1	copy fasta	KLF3	chr4	38659199	38706517
KLF3_chr4_38659199_38706517	0/0	t0019	4561	2	2	0	0	0	0	copy fasta	KLF3	chr4	38659199	38706517
KLF3_chr4_38659199_38706517	0/0	t0020	4557	1	0	0	1	0	0	copy fasta	KLF3	chr4	38659199	38706517
KLF3_chr4_38659199_38706517	0/0	t0021	4557	1	0	0	0	0	1	copy fasta	KLF3	chr4	38659199	38706517
KLF3_chr4_38659199_38706517	0/0	t0022	4557	1	0	0	1	0	0	copy fasta	KLF3	chr4	38659199	38706517
KLF3_chr4_38659199_38706517	0/0	t0023	4557	1	0	1	0	0	0	copy fasta	KLF3	chr4	38659199	38706517
KLF3_chr4_38659199_38706517	0/0	t0024	4557	1	1	0	0	0	0	copy fasta	KLF3	chr4	38659199	38706517
KLF3_chr4_38659199_38706517	0/0	t0025	4557	1	1	0	0	0	0	copy fasta	KLF3	chr4	38659199	38706517
KLF3_chr4_38659199_38706517	0/0	t0026	4557	1	1	0	0	0	0	copy fasta	KLF3	chr4	38659199	38706517
KLF3_chr4_38659199_38706517	0/0	t0027	4557	1	0	0	1	0	0	copy fasta	KLF3	chr4	38659199	38706517
KLF3_chr4_38659199_38706517	0/0	t0028	4561	1	0	1	0	0	0	copy fasta	KLF3	chr4	38659199	38706517
KLF3_chr4_38659199_38706517	0/0	t0029	4557	1	0	0	1	0	0	copy fasta	KLF3	chr4	38659199	38706517
KLF3_chr4_38659199_38706517	0/0	t0030	4557	1	0	0	0	0	1	copy fasta	KLF3	chr4	38659199	38706517
KLF3_chr4_38659199_38706517	0/0	t0031	4557	1	0	0	0	1	0	copy fasta	KLF3	chr4	38659199	38706517
KLF3_chr4_38659199_38706517	0/0	t0032	4557	1	1	0	0	0	0	copy fasta	KLF3	chr4	38659199	38706517
KLF3_chr4_38659199_38706517	0/0	t0033	4557	1	0	0	1	0	0	copy fasta	KLF3	chr4	38659199	38706517
KLF3_chr4_38659199_38706517	0/0	t0034	4557	1	1	0	0	0	0	copy fasta	KLF3	chr4	38659199	38706517
KLF3_chr4_38659199_38706517	0/0	t0035	4557	1	1	0	0	0	0	copy fasta	KLF3	chr4	38659199	38706517
KLF3_chr4_38659199_38706517	0/0	t0036	4561	1	0	0	0	0	1	copy fasta	KLF3	chr4	38659199	38706517
KLF4_chr9_107479852_107494769	0/1	t0001	1496	327	56	55	160	15	40	copy fasta	KLF4	chr9	107479852	107494769
KLF4_chr9_107479852_107494769	0/0	t0002	1496	48	1	11	29	2	5	copy fasta	KLF4	chr9	107479852	107494769
KLF4_chr9_107479852_107494769	0/0	t0003	1492	15	13	2	0	0	0	copy fasta	KLF4	chr9	107479852	107494769
KLF4_chr9_107479852_107494769	0/0	t0004	1496	13	10	3	0	0	0	copy fasta	KLF4	chr9	107479852	107494769
KLF4_chr9_107479852_107494769	0/0	t0005	1495	5	5	0	0	0	0	copy fasta	KLF4	chr9	107479852	107494769
KLF4_chr9_107479852_107494769	0/0	t0006	1496	3	3	0	0	0	0	copy fasta	KLF4	chr9	107479852	107494769
KLF4_chr9_107479852_107494769	0/0	t0007	1503	3	3	0	0	0	0	copy fasta	KLF4	chr9	107479852	107494769
KLF4_chr9_107479852_107494769	0/0	t0008	1495	2	2	0	0	0	0	copy fasta	KLF4	chr9	107479852	107494769
KLF4_chr9_107479852_107494769	0/0	t0009	1496	2	0	1	0	1	0	copy fasta	KLF4	chr9	107479852	107494769
KLF4_chr9_107479852_107494769	1/0	t0010	1497	1	0	0	0	0	0	copy fasta	KLF4	chr9	107479852	107494769
KLF4_chr9_107479852_107494769	0/0	t0011	1496	1	1	0	0	0	0	copy fasta	KLF4	chr9	107479852	107494769
KLF4_chr9_107479852_107494769	0/0	t0012	1496	1	0	0	1	0	0	copy fasta	KLF4	chr9	107479852	107494769
KLF4_chr9_107479852_107494769	0/0	t0013	1496	1	1	0	0	0	0	copy fasta	KLF4	chr9	107479852	107494769
KLF4_chr9_107479852_107494769	0/0	t0014	1492	1	1	0	0	0	0	copy fasta	KLF4	chr9	107479852	107494769
KLF4_chr9_107479852_107494769	0/0	t0015	1496	1	0	0	1	0	0	copy fasta	KLF4	chr9	107479852	107494769
KLF4_chr9_107479852_107494769	0/0	t0016	1496	1	0	0	0	0	1	copy fasta	KLF4	chr9	107479852	107494769