JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KLF4_chr9_107479852_107494769	0/0	t0017	1496	1	0	0	1	0	0	copy fasta	KLF4	chr9	107479852	107494769
KLF4_chr9_107479852_107494769	0/0	t0018	1496	1	0	0	1	0	0	copy fasta	KLF4	chr9	107479852	107494769
KLF4_chr9_107479852_107494769	0/0	t0019	1496	1	0	0	1	0	0	copy fasta	KLF4	chr9	107479852	107494769
KLF5_chr13_73054005_73082538	0/0	t0001	1977	207	40	37	102	6	22	copy fasta	KLF5	chr13	73054005	73082538
KLF5_chr13_73054005_73082538	0/1	t0002	1976	158	8	34	88	8	19	copy fasta	KLF5	chr13	73054005	73082538
KLF5_chr13_73054005_73082538	1/0	t0003	1976	34	14	9	4	2	4	copy fasta	KLF5	chr13	73054005	73082538
KLF5_chr13_73054005_73082538	0/0	t0004	1977	15	14	1	0	0	0	copy fasta	KLF5	chr13	73054005	73082538
KLF5_chr13_73054005_73082538	0/0	t0005	1978	6	4	1	1	0	0	copy fasta	KLF5	chr13	73054005	73082538
KLF5_chr13_73054005_73082538	0/0	t0006	1977	5	5	0	0	0	0	copy fasta	KLF5	chr13	73054005	73082538
KLF5_chr13_73054005_73082538	0/0	t0007	1977	3	0	0	3	0	0	copy fasta	KLF5	chr13	73054005	73082538
KLF5_chr13_73054005_73082538	0/0	t0008	1976	2	2	0	0	0	0	copy fasta	KLF5	chr13	73054005	73082538
KLF5_chr13_73054005_73082538	0/0	t0009	1977	1	1	0	0	0	0	copy fasta	KLF5	chr13	73054005	73082538
KLF5_chr13_73054005_73082538	0/0	t0010	1977	1	0	0	1	0	0	copy fasta	KLF5	chr13	73054005	73082538
KLF5_chr13_73054005_73082538	0/0	t0011	1977	1	0	0	1	0	0	copy fasta	KLF5	chr13	73054005	73082538
KLF5_chr13_73054005_73082538	0/0	t0012	1976	1	0	0	0	0	1	copy fasta	KLF5	chr13	73054005	73082538
KLF5_chr13_73054005_73082538	0/0	t0013	1976	1	0	0	1	0	0	copy fasta	KLF5	chr13	73054005	73082538
KLF5_chr13_73054005_73082538	0/0	t0014	1977	1	1	0	0	0	0	copy fasta	KLF5	chr13	73054005	73082538
KLF5_chr13_73054005_73082538	0/0	t0015	1976	1	1	0	0	0	0	copy fasta	KLF5	chr13	73054005	73082538
KLF5_chr13_73054005_73082538	0/0	t0016	1977	1	1	0	0	0	0	copy fasta	KLF5	chr13	73054005	73082538
KLF5_chr13_73054005_73082538	0/0	t0017	1976	1	0	0	1	0	0	copy fasta	KLF5	chr13	73054005	73082538
KLF5_chr13_73054005_73082538	0/0	t0018	1976	1	1	0	0	0	0	copy fasta	KLF5	chr13	73054005	73082538
KLF6_chr10_3770996_3790209	0/1	t0001	3739	101	0	15	76	3	6	copy fasta	KLF6	chr10	3770996	3790209
KLF6_chr10_3770996_3790209	0/0	t0002	3739	73	6	16	39	2	10	copy fasta	KLF6	chr10	3770996	3790209
KLF6_chr10_3770996_3790209	0/0	t0003	3739	58	1	7	41	4	5	copy fasta	KLF6	chr10	3770996	3790209
KLF6_chr10_3770996_3790209	1/0	t0004	3739	48	22	11	7	1	6	copy fasta	KLF6	chr10	3770996	3790209
KLF6_chr10_3770996_3790209	0/0	t0005	3740	24	1	8	14	1	0	copy fasta	KLF6	chr10	3770996	3790209
KLF6_chr10_3770996_3790209	0/0	t0006	3738	19	17	2	0	0	0	copy fasta	KLF6	chr10	3770996	3790209
KLF6_chr10_3770996_3790209	0/0	t0007	3738	15	10	0	0	1	4	copy fasta	KLF6	chr10	3770996	3790209
KLF6_chr10_3770996_3790209	0/0	t0008	3738	11	0	1	10	0	0	copy fasta	KLF6	chr10	3770996	3790209
KLF6_chr10_3770996_3790209	0/0	t0009	3740	6	5	1	0	0	0	copy fasta	KLF6	chr10	3770996	3790209
KLF6_chr10_3770996_3790209	0/0	t0010	3739	6	6	0	0	0	0	copy fasta	KLF6	chr10	3770996	3790209
KLF6_chr10_3770996_3790209	0/0	t0011	3739	5	4	1	0	0	0	copy fasta	KLF6	chr10	3770996	3790209
KLF6_chr10_3770996_3790209	0/0	t0012	3740	5	0	4	0	1	0	copy fasta	KLF6	chr10	3770996	3790209
KLF6_chr10_3770996_3790209	0/0	t0013	3739	5	0	3	0	2	0	copy fasta	KLF6	chr10	3770996	3790209
KLF6_chr10_3770996_3790209	0/0	t0014	3740	4	0	0	4	0	0	copy fasta	KLF6	chr10	3770996	3790209
KLF6_chr10_3770996_3790209	0/0	t0015	3738	3	2	1	0	0	0	copy fasta	KLF6	chr10	3770996	3790209
KLF6_chr10_3770996_3790209	0/0	t0016	3738	3	3	0	0	0	0	copy fasta	KLF6	chr10	3770996	3790209
KLF6_chr10_3770996_3790209	0/0	t0017	3739	2	2	0	0	0	0	copy fasta	KLF6	chr10	3770996	3790209
KLF6_chr10_3770996_3790209	0/0	t0018	3738	2	0	1	0	0	1	copy fasta	KLF6	chr10	3770996	3790209
KLF6_chr10_3770996_3790209	0/0	t0019	3739	2	0	0	0	0	2	copy fasta	KLF6	chr10	3770996	3790209
KLF6_chr10_3770996_3790209	0/0	t0020	3738	2	2	0	0	0	0	copy fasta	KLF6	chr10	3770996	3790209
KLF6_chr10_3770996_3790209	0/0	t0021	3739	2	0	0	2	0	0	copy fasta	KLF6	chr10	3770996	3790209
KLF6_chr10_3770996_3790209	0/0	t0022	3737	2	2	0	0	0	0	copy fasta	KLF6	chr10	3770996	3790209
KLF6_chr10_3770996_3790209	0/0	t0023	3739	2	0	0	2	0	0	copy fasta	KLF6	chr10	3770996	3790209
KLF6_chr10_3770996_3790209	0/0	t0024	3739	2	0	0	0	0	2	copy fasta	KLF6	chr10	3770996	3790209
KLF6_chr10_3770996_3790209	0/0	t0025	3740	2	0	0	2	0	0	copy fasta	KLF6	chr10	3770996	3790209
KLF6_chr10_3770996_3790209	0/0	t0026	3740	2	0	0	0	0	2	copy fasta	KLF6	chr10	3770996	3790209
KLF6_chr10_3770996_3790209	0/0	t0027	3738	2	0	0	2	0	0	copy fasta	KLF6	chr10	3770996	3790209
KLF6_chr10_3770996_3790209	0/0	t0028	3739	2	0	2	0	0	0	copy fasta	KLF6	chr10	3770996	3790209
KLF6_chr10_3770996_3790209	0/0	t0029	3740	2	0	0	2	0	0	copy fasta	KLF6	chr10	3770996	3790209