JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KLF6_chr10_3770996_3790209	0/0	t0030	3739	2	0	0	0	0	2	copy fasta	KLF6	chr10	3770996	3790209
KLF6_chr10_3770996_3790209	0/0	t0031	3739	2	0	1	0	0	1	copy fasta	KLF6	chr10	3770996	3790209
KLF6_chr10_3770996_3790209	0/0	t0032	3739	2	0	1	0	1	0	copy fasta	KLF6	chr10	3770996	3790209
KLF6_chr10_3770996_3790209	0/0	t0033	3739	2	2	0	0	0	0	copy fasta	KLF6	chr10	3770996	3790209
KLF6_chr10_3770996_3790209	0/0	t0034	3739	1	0	0	0	0	1	copy fasta	KLF6	chr10	3770996	3790209
KLF6_chr10_3770996_3790209	0/0	t0035	3738	1	1	0	0	0	0	copy fasta	KLF6	chr10	3770996	3790209
KLF6_chr10_3770996_3790209	0/0	t0036	3739	1	1	0	0	0	0	copy fasta	KLF6	chr10	3770996	3790209
KLF6_chr10_3770996_3790209	0/0	t0037	3738	1	1	0	0	0	0	copy fasta	KLF6	chr10	3770996	3790209
KLF6_chr10_3770996_3790209	0/0	t0038	3741	1	0	0	1	0	0	copy fasta	KLF6	chr10	3770996	3790209
KLF6_chr10_3770996_3790209	0/0	t0039	3738	1	0	1	0	0	0	copy fasta	KLF6	chr10	3770996	3790209
KLF6_chr10_3770996_3790209	0/0	t0040	3739	1	0	0	0	0	1	copy fasta	KLF6	chr10	3770996	3790209
KLF6_chr10_3770996_3790209	0/0	t0041	3739	1	0	0	1	0	0	copy fasta	KLF6	chr10	3770996	3790209
KLF6_chr10_3770996_3790209	0/0	t0042	3739	1	0	0	1	0	0	copy fasta	KLF6	chr10	3770996	3790209
KLF6_chr10_3770996_3790209	0/0	t0043	3741	1	0	0	1	0	0	copy fasta	KLF6	chr10	3770996	3790209
KLF6_chr10_3770996_3790209	0/0	t0044	3741	1	0	0	1	0	0	copy fasta	KLF6	chr10	3770996	3790209
KLF6_chr10_3770996_3790209	0/0	t0045	3740	1	0	0	1	0	0	copy fasta	KLF6	chr10	3770996	3790209
KLF6_chr10_3770996_3790209	0/0	t0046	3739	1	0	0	1	0	0	copy fasta	KLF6	chr10	3770996	3790209
KLF6_chr10_3770996_3790209	0/0	t0047	3738	1	1	0	0	0	0	copy fasta	KLF6	chr10	3770996	3790209
KLF6_chr10_3770996_3790209	0/0	t0048	3739	1	0	0	0	0	1	copy fasta	KLF6	chr10	3770996	3790209
KLF6_chr10_3770996_3790209	0/0	t0049	3739	1	0	0	1	0	0	copy fasta	KLF6	chr10	3770996	3790209
KLF6_chr10_3770996_3790209	0/0	t0050	3738	1	1	0	0	0	0	copy fasta	KLF6	chr10	3770996	3790209
KLF6_chr10_3770996_3790209	0/0	t0051	3739	1	0	0	1	0	0	copy fasta	KLF6	chr10	3770996	3790209
KLF6_chr10_3770996_3790209	0/0	t0052	3739	1	1	0	0	0	0	copy fasta	KLF6	chr10	3770996	3790209
KLF6_chr10_3770996_3790209	0/0	t0053	3739	1	0	0	0	0	1	copy fasta	KLF6	chr10	3770996	3790209
KLF6_chr10_3770996_3790209	0/0	t0054	3739	1	1	0	0	0	0	copy fasta	KLF6	chr10	3770996	3790209
KLF6_chr10_3770996_3790209	0/0	t0055	3739	1	1	0	0	0	0	copy fasta	KLF6	chr10	3770996	3790209
KLF6_chr10_3770996_3790209	0/0	t0056	3739	1	0	0	0	0	1	copy fasta	KLF6	chr10	3770996	3790209
KLF6_chr10_3770996_3790209	0/0	t0057	3739	1	0	0	1	0	0	copy fasta	KLF6	chr10	3770996	3790209
KLF6_chr10_3770996_3790209	0/0	t0058	3739	1	0	0	1	0	0	copy fasta	KLF6	chr10	3770996	3790209
KLF6_chr10_3770996_3790209	0/0	t0059	3739	1	0	0	1	0	0	copy fasta	KLF6	chr10	3770996	3790209
KLF6_chr10_3770996_3790209	0/0	t0060	3741	1	0	0	1	0	0	copy fasta	KLF6	chr10	3770996	3790209
KLF6_chr10_3770996_3790209	0/0	t0061	3739	1	0	0	1	0	0	copy fasta	KLF6	chr10	3770996	3790209
KLF6_chr10_3770996_3790209	0/0	t0062	3739	1	0	0	1	0	0	copy fasta	KLF6	chr10	3770996	3790209
KLF6_chr10_3770996_3790209	0/0	t0063	3738	1	0	0	1	0	0	copy fasta	KLF6	chr10	3770996	3790209
KLF6_chr10_3770996_3790209	0/0	t0064	3739	1	0	0	1	0	0	copy fasta	KLF6	chr10	3770996	3790209
KLF6_chr10_3770996_3790209	0/0	t0065	3739	1	0	0	1	0	0	copy fasta	KLF6	chr10	3770996	3790209
KLF6_chr10_3770996_3790209	0/0	t0066	3739	1	0	0	1	0	0	copy fasta	KLF6	chr10	3770996	3790209
KLF6_chr10_3770996_3790209	0/0	t0067	3739	1	0	0	1	0	0	copy fasta	KLF6	chr10	3770996	3790209
KLF6_chr10_3770996_3790209	0/0	t0068	3738	1	1	0	0	0	0	copy fasta	KLF6	chr10	3770996	3790209
KLF6_chr10_3770996_3790209	0/0	t0069	3739	1	0	0	1	0	0	copy fasta	KLF6	chr10	3770996	3790209
KLF6_chr10_3770996_3790209	0/0	t0070	3739	1	0	0	1	0	0	copy fasta	KLF6	chr10	3770996	3790209
KLF6_chr10_3770996_3790209	0/0	t0071	3739	1	0	0	1	0	0	copy fasta	KLF6	chr10	3770996	3790209
KLF7_chr2_207069137_207170948	1/0	t0001	7457	74	3	16	40	2	12	copy fasta	KLF7	chr2	207069137	207170948
KLF7_chr2_207069137_207170948	0/0	t0002	7456	37	13	2	14	2	6	copy fasta	KLF7	chr2	207069137	207170948
KLF7_chr2_207069137_207170948	0/1	t0003	7458	23	4	13	0	1	4	copy fasta	KLF7	chr2	207069137	207170948
KLF7_chr2_207069137_207170948	0/0	t0004	7457	22	7	8	5	0	2	copy fasta	KLF7	chr2	207069137	207170948
KLF7_chr2_207069137_207170948	0/0	t0005	7456	11	0	0	11	0	0	copy fasta	KLF7	chr2	207069137	207170948
KLF7_chr2_207069137_207170948	0/0	t0006	7459	10	0	2	6	1	1	copy fasta	KLF7	chr2	207069137	207170948
KLF7_chr2_207069137_207170948	0/0	t0007	7454	10	0	6	0	4	0	copy fasta	KLF7	chr2	207069137	207170948
KLF7_chr2_207069137_207170948	0/0	t0008	7456	9	0	1	8	0	0	copy fasta	KLF7	chr2	207069137	207170948