JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KLF7_chr2_207069137_207170948	0/0	t0009	7458	8	8	0	0	0	0	copy fasta	KLF7	chr2	207069137	207170948
KLF7_chr2_207069137_207170948	0/0	t0010	7459	6	0	3	3	0	0	copy fasta	KLF7	chr2	207069137	207170948
KLF7_chr2_207069137_207170948	0/0	t0011	7458	6	0	1	0	3	2	copy fasta	KLF7	chr2	207069137	207170948
KLF7_chr2_207069137_207170948	0/0	t0012	7455	5	5	0	0	0	0	copy fasta	KLF7	chr2	207069137	207170948
KLF7_chr2_207069137_207170948	0/0	t0013	7457	5	5	0	0	0	0	copy fasta	KLF7	chr2	207069137	207170948
KLF7_chr2_207069137_207170948	0/0	t0014	7461	4	0	0	4	0	0	copy fasta	KLF7	chr2	207069137	207170948
KLF7_chr2_207069137_207170948	0/0	t0015	7459	4	0	0	4	0	0	copy fasta	KLF7	chr2	207069137	207170948
KLF7_chr2_207069137_207170948	0/0	t0016	7458	3	0	0	2	0	1	copy fasta	KLF7	chr2	207069137	207170948
KLF7_chr2_207069137_207170948	0/0	t0017	7456	3	3	0	0	0	0	copy fasta	KLF7	chr2	207069137	207170948
KLF7_chr2_207069137_207170948	0/0	t0018	7452	3	0	0	3	0	0	copy fasta	KLF7	chr2	207069137	207170948
KLF7_chr2_207069137_207170948	0/0	t0019	7456	3	3	0	0	0	0	copy fasta	KLF7	chr2	207069137	207170948
KLF7_chr2_207069137_207170948	0/0	t0020	7457	3	3	0	0	0	0	copy fasta	KLF7	chr2	207069137	207170948
KLF7_chr2_207069137_207170948	0/0	t0021	7457	3	3	0	0	0	0	copy fasta	KLF7	chr2	207069137	207170948
KLF7_chr2_207069137_207170948	0/0	t0022	7456	3	3	0	0	0	0	copy fasta	KLF7	chr2	207069137	207170948
KLF7_chr2_207069137_207170948	0/0	t0023	7458	3	1	2	0	0	0	copy fasta	KLF7	chr2	207069137	207170948
KLF7_chr2_207069137_207170948	0/0	t0024	7457	2	0	2	0	0	0	copy fasta	KLF7	chr2	207069137	207170948
KLF7_chr2_207069137_207170948	0/0	t0025	7460	2	2	0	0	0	0	copy fasta	KLF7	chr2	207069137	207170948
KLF7_chr2_207069137_207170948	0/0	t0026	7456	2	0	0	0	1	1	copy fasta	KLF7	chr2	207069137	207170948
KLF7_chr2_207069137_207170948	0/0	t0027	7456	2	0	0	2	0	0	copy fasta	KLF7	chr2	207069137	207170948
KLF7_chr2_207069137_207170948	0/0	t0028	7456	2	0	0	2	0	0	copy fasta	KLF7	chr2	207069137	207170948
KLF7_chr2_207069137_207170948	0/0	t0029	7451	2	2	0	0	0	0	copy fasta	KLF7	chr2	207069137	207170948
KLF7_chr2_207069137_207170948	0/0	t0030	7459	2	0	0	1	0	1	copy fasta	KLF7	chr2	207069137	207170948
KLF7_chr2_207069137_207170948	0/0	t0031	7456	2	2	0	0	0	0	copy fasta	KLF7	chr2	207069137	207170948
KLF7_chr2_207069137_207170948	0/0	t0032	7456	2	2	0	0	0	0	copy fasta	KLF7	chr2	207069137	207170948
KLF7_chr2_207069137_207170948	0/0	t0033	7458	2	2	0	0	0	0	copy fasta	KLF7	chr2	207069137	207170948
KLF7_chr2_207069137_207170948	0/0	t0034	7457	1	0	0	1	0	0	copy fasta	KLF7	chr2	207069137	207170948
KLF7_chr2_207069137_207170948	0/0	t0035	7461	1	0	0	1	0	0	copy fasta	KLF7	chr2	207069137	207170948
KLF7_chr2_207069137_207170948	0/0	t0036	7461	1	0	0	1	0	0	copy fasta	KLF7	chr2	207069137	207170948
KLF7_chr2_207069137_207170948	0/0	t0037	7459	1	1	0	0	0	0	copy fasta	KLF7	chr2	207069137	207170948
KLF7_chr2_207069137_207170948	0/0	t0038	7459	1	0	0	1	0	0	copy fasta	KLF7	chr2	207069137	207170948
KLF7_chr2_207069137_207170948	0/0	t0039	7461	1	0	1	0	0	0	copy fasta	KLF7	chr2	207069137	207170948
KLF7_chr2_207069137_207170948	0/0	t0040	7460	1	1	0	0	0	0	copy fasta	KLF7	chr2	207069137	207170948
KLF7_chr2_207069137_207170948	0/0	t0041	7458	1	0	1	0	0	0	copy fasta	KLF7	chr2	207069137	207170948
KLF7_chr2_207069137_207170948	0/0	t0042	7458	1	0	1	0	0	0	copy fasta	KLF7	chr2	207069137	207170948
KLF7_chr2_207069137_207170948	0/0	t0043	7460	1	0	1	0	0	0	copy fasta	KLF7	chr2	207069137	207170948
KLF7_chr2_207069137_207170948	0/0	t0044	7461	1	0	0	1	0	0	copy fasta	KLF7	chr2	207069137	207170948
KLF7_chr2_207069137_207170948	0/0	t0045	7460	1	0	0	1	0	0	copy fasta	KLF7	chr2	207069137	207170948
KLF7_chr2_207069137_207170948	0/0	t0046	7456	1	0	0	1	0	0	copy fasta	KLF7	chr2	207069137	207170948
KLF7_chr2_207069137_207170948	0/0	t0047	7456	1	1	0	0	0	0	copy fasta	KLF7	chr2	207069137	207170948
KLF7_chr2_207069137_207170948	0/0	t0048	7458	1	0	0	1	0	0	copy fasta	KLF7	chr2	207069137	207170948
KLF7_chr2_207069137_207170948	0/0	t0049	7456	1	1	0	0	0	0	copy fasta	KLF7	chr2	207069137	207170948
KLF7_chr2_207069137_207170948	0/0	t0050	7456	1	0	1	0	0	0	copy fasta	KLF7	chr2	207069137	207170948
KLF7_chr2_207069137_207170948	0/0	t0051	7457	1	1	0	0	0	0	copy fasta	KLF7	chr2	207069137	207170948
KLF7_chr2_207069137_207170948	0/0	t0052	7458	1	1	0	0	0	0	copy fasta	KLF7	chr2	207069137	207170948
KLF7_chr2_207069137_207170948	0/0	t0053	7456	1	1	0	0	0	0	copy fasta	KLF7	chr2	207069137	207170948
KLF7_chr2_207069137_207170948	0/0	t0054	7456	1	0	1	0	0	0	copy fasta	KLF7	chr2	207069137	207170948
KLF7_chr2_207069137_207170948	0/0	t0055	7457	1	1	0	0	0	0	copy fasta	KLF7	chr2	207069137	207170948
KLF7_chr2_207069137_207170948	0/0	t0056	7459	1	1	0	0	0	0	copy fasta	KLF7	chr2	207069137	207170948
KLF7_chr2_207069137_207170948	0/0	t0057	7459	1	1	0	0	0	0	copy fasta	KLF7	chr2	207069137	207170948
KLF7_chr2_207069137_207170948	0/0	t0058	7457	1	0	0	1	0	0	copy fasta	KLF7	chr2	207069137	207170948