JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KLF7_chr2_207069137_207170948	0/0	t0059	7451	1	0	0	0	0	1	copy fasta	KLF7	chr2	207069137	207170948
KLF7_chr2_207069137_207170948	0/0	t0060	7454	1	0	1	0	0	0	copy fasta	KLF7	chr2	207069137	207170948
KLF7_chr2_207069137_207170948	0/0	t0061	7454	1	0	0	0	0	1	copy fasta	KLF7	chr2	207069137	207170948
KLF7_chr2_207069137_207170948	0/0	t0062	7454	1	1	0	0	0	0	copy fasta	KLF7	chr2	207069137	207170948
KLF7_chr2_207069137_207170948	0/0	t0063	7455	1	1	0	0	0	0	copy fasta	KLF7	chr2	207069137	207170948
KLF7_chr2_207069137_207170948	0/0	t0064	7456	1	0	0	1	0	0	copy fasta	KLF7	chr2	207069137	207170948
KLF7_chr2_207069137_207170948	0/0	t0065	7457	1	0	1	0	0	0	copy fasta	KLF7	chr2	207069137	207170948
KLF7_chr2_207069137_207170948	0/0	t0066	7457	1	0	0	1	0	0	copy fasta	KLF7	chr2	207069137	207170948
KLF7_chr2_207069137_207170948	0/0	t0067	7456	1	1	0	0	0	0	copy fasta	KLF7	chr2	207069137	207170948
KLF7_chr2_207069137_207170948	0/0	t0068	7462	1	0	0	1	0	0	copy fasta	KLF7	chr2	207069137	207170948
KLF7_chr2_207069137_207170948	0/0	t0069	7459	1	1	0	0	0	0	copy fasta	KLF7	chr2	207069137	207170948
KLF7_chr2_207069137_207170948	0/0	t0070	7457	1	1	0	0	0	0	copy fasta	KLF7	chr2	207069137	207170948
KLF7_chr2_207069137_207170948	0/0	t0071	7457	1	1	0	0	0	0	copy fasta	KLF7	chr2	207069137	207170948
KLF7_chr2_207069137_207170948	0/0	t0072	7457	1	1	0	0	0	0	copy fasta	KLF7	chr2	207069137	207170948
KLF7_chr2_207069137_207170948	0/0	t0073	7456	1	0	0	1	0	0	copy fasta	KLF7	chr2	207069137	207170948
KLF8_chrX_56227356_56296531	0/0	t0001	8017	98	1	17	62	5	13	copy fasta	KLF8	chrX	56227356	56296531
KLF8_chrX_56227356_56296531	1/0	t0002	8017	63	13	13	33	1	2	copy fasta	KLF8	chrX	56227356	56296531
KLF8_chrX_56227356_56296531	0/1	t0003	8015	47	37	7	0	0	2	copy fasta	KLF8	chrX	56227356	56296531
KLF8_chrX_56227356_56296531	0/0	t0004	8016	8	7	1	0	0	0	copy fasta	KLF8	chrX	56227356	56296531
KLF8_chrX_56227356_56296531	0/0	t0005	8017	5	0	5	0	0	0	copy fasta	KLF8	chrX	56227356	56296531
KLF8_chrX_56227356_56296531	0/0	t0006	8017	4	4	0	0	0	0	copy fasta	KLF8	chrX	56227356	56296531
KLF8_chrX_56227356_56296531	0/0	t0007	8017	4	0	0	4	0	0	copy fasta	KLF8	chrX	56227356	56296531
KLF8_chrX_56227356_56296531	0/0	t0008	8017	3	0	0	3	0	0	copy fasta	KLF8	chrX	56227356	56296531
KLF8_chrX_56227356_56296531	0/0	t0009	8017	3	0	0	3	0	0	copy fasta	KLF8	chrX	56227356	56296531
KLF8_chrX_56227356_56296531	0/0	t0010	8015	2	2	0	0	0	0	copy fasta	KLF8	chrX	56227356	56296531
KLF8_chrX_56227356_56296531	0/0	t0011	8017	2	0	0	0	1	1	copy fasta	KLF8	chrX	56227356	56296531
KLF8_chrX_56227356_56296531	0/0	t0012	8017	2	0	0	2	0	0	copy fasta	KLF8	chrX	56227356	56296531
KLF8_chrX_56227356_56296531	0/0	t0013	8017	2	0	0	2	0	0	copy fasta	KLF8	chrX	56227356	56296531
KLF8_chrX_56227356_56296531	0/0	t0014	8015	2	2	0	0	0	0	copy fasta	KLF8	chrX	56227356	56296531
KLF8_chrX_56227356_56296531	0/0	t0015	8015	1	0	0	1	0	0	copy fasta	KLF8	chrX	56227356	56296531
KLF8_chrX_56227356_56296531	0/0	t0016	8015	1	0	1	0	0	0	copy fasta	KLF8	chrX	56227356	56296531
KLF8_chrX_56227356_56296531	0/0	t0017	8016	1	0	0	1	0	0	copy fasta	KLF8	chrX	56227356	56296531
KLF8_chrX_56227356_56296531	0/0	t0018	8017	1	1	0	0	0	0	copy fasta	KLF8	chrX	56227356	56296531
KLF8_chrX_56227356_56296531	0/0	t0019	8017	1	0	0	0	0	1	copy fasta	KLF8	chrX	56227356	56296531
KLF8_chrX_56227356_56296531	0/0	t0020	8017	1	0	1	0	0	0	copy fasta	KLF8	chrX	56227356	56296531
KLF8_chrX_56227356_56296531	0/0	t0021	8017	1	0	0	0	0	1	copy fasta	KLF8	chrX	56227356	56296531
KLF8_chrX_56227356_56296531	0/0	t0022	8017	1	0	0	1	0	0	copy fasta	KLF8	chrX	56227356	56296531
KLF8_chrX_56227356_56296531	0/0	t0023	8017	1	0	0	1	0	0	copy fasta	KLF8	chrX	56227356	56296531
KLF8_chrX_56227356_56296531	0/0	t0024	8017	1	1	0	0	0	0	copy fasta	KLF8	chrX	56227356	56296531
KLF8_chrX_56227356_56296531	0/0	t0025	8015	1	1	0	0	0	0	copy fasta	KLF8	chrX	56227356	56296531
KLF8_chrX_56227356_56296531	0/0	t0026	8017	1	0	1	0	0	0	copy fasta	KLF8	chrX	56227356	56296531
KLF8_chrX_56227356_56296531	0/0	t0027	8017	1	1	0	0	0	0	copy fasta	KLF8	chrX	56227356	56296531
KLF8_chrX_56227356_56296531	0/0	t0028	8015	1	1	0	0	0	0	copy fasta	KLF8	chrX	56227356	56296531
KLF8_chrX_56227356_56296531	0/0	t0029	8015	1	1	0	0	0	0	copy fasta	KLF8	chrX	56227356	56296531
KLF8_chrX_56227356_56296531	0/0	t0030	8017	1	0	0	1	0	0	copy fasta	KLF8	chrX	56227356	56296531
KLF8_chrX_56227356_56296531	0/0	t0031	8015	1	0	0	1	0	0	copy fasta	KLF8	chrX	56227356	56296531
KLF9_chr9_70379604_70419657	0/1	t0001	4467	156	25	37	71	8	14	copy fasta	KLF9	chr9	70379604	70419657
KLF9_chr9_70379604_70419657	0/0	t0002	4467	64	1	6	48	0	9	copy fasta	KLF9	chr9	70379604	70419657
KLF9_chr9_70379604_70419657	0/0	t0003	4467	58	2	16	24	4	12	copy fasta	KLF9	chr9	70379604	70419657
KLF9_chr9_70379604_70419657	0/0	t0004	4467	26	9	2	12	0	3	copy fasta	KLF9	chr9	70379604	70419657