JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KLF9_chr9_70379604_70419657	0/0	t0005	4467	10	5	1	2	1	1	copy fasta	KLF9	chr9	70379604	70419657
KLF9_chr9_70379604_70419657	0/0	t0006	4467	10	0	1	8	0	1	copy fasta	KLF9	chr9	70379604	70419657
KLF9_chr9_70379604_70419657	1/0	t0007	4467	8	7	0	0	0	0	copy fasta	KLF9	chr9	70379604	70419657
KLF9_chr9_70379604_70419657	0/0	t0008	4467	7	6	1	0	0	0	copy fasta	KLF9	chr9	70379604	70419657
KLF9_chr9_70379604_70419657	0/0	t0009	4468	6	4	1	0	0	1	copy fasta	KLF9	chr9	70379604	70419657
KLF9_chr9_70379604_70419657	0/0	t0010	4467	5	1	4	0	0	0	copy fasta	KLF9	chr9	70379604	70419657
KLF9_chr9_70379604_70419657	0/0	t0011	4468	4	1	0	1	1	1	copy fasta	KLF9	chr9	70379604	70419657
KLF9_chr9_70379604_70419657	0/0	t0012	4468	4	0	0	3	0	1	copy fasta	KLF9	chr9	70379604	70419657
KLF9_chr9_70379604_70419657	0/0	t0013	4457	4	0	0	4	0	0	copy fasta	KLF9	chr9	70379604	70419657
KLF9_chr9_70379604_70419657	0/0	t0014	4468	3	1	2	0	0	0	copy fasta	KLF9	chr9	70379604	70419657
KLF9_chr9_70379604_70419657	0/0	t0015	4468	3	3	0	0	0	0	copy fasta	KLF9	chr9	70379604	70419657
KLF9_chr9_70379604_70419657	0/0	t0016	4465	3	3	0	0	0	0	copy fasta	KLF9	chr9	70379604	70419657
KLF9_chr9_70379604_70419657	0/0	t0017	4467	2	2	0	0	0	0	copy fasta	KLF9	chr9	70379604	70419657
KLF9_chr9_70379604_70419657	0/0	t0018	4467	2	2	0	0	0	0	copy fasta	KLF9	chr9	70379604	70419657
KLF9_chr9_70379604_70419657	0/0	t0019	4468	2	2	0	0	0	0	copy fasta	KLF9	chr9	70379604	70419657
KLF9_chr9_70379604_70419657	0/0	t0020	4467	2	0	0	2	0	0	copy fasta	KLF9	chr9	70379604	70419657
KLF9_chr9_70379604_70419657	0/0	t0021	4469	2	2	0	0	0	0	copy fasta	KLF9	chr9	70379604	70419657
KLF9_chr9_70379604_70419657	0/0	t0022	4467	1	0	0	0	0	1	copy fasta	KLF9	chr9	70379604	70419657
KLF9_chr9_70379604_70419657	0/0	t0023	4467	1	0	0	0	0	1	copy fasta	KLF9	chr9	70379604	70419657
KLF9_chr9_70379604_70419657	0/0	t0024	4468	1	1	0	0	0	0	copy fasta	KLF9	chr9	70379604	70419657
KLF9_chr9_70379604_70419657	0/0	t0025	4467	1	1	0	0	0	0	copy fasta	KLF9	chr9	70379604	70419657
KLF9_chr9_70379604_70419657	0/0	t0026	4467	1	0	0	1	0	0	copy fasta	KLF9	chr9	70379604	70419657
KLF9_chr9_70379604_70419657	0/0	t0027	4468	1	0	0	1	0	0	copy fasta	KLF9	chr9	70379604	70419657
KLF9_chr9_70379604_70419657	0/0	t0028	4467	1	1	0	0	0	0	copy fasta	KLF9	chr9	70379604	70419657
KLF9_chr9_70379604_70419657	0/0	t0029	4467	1	0	0	1	0	0	copy fasta	KLF9	chr9	70379604	70419657
KLF9_chr9_70379604_70419657	0/0	t0030	4435	1	0	0	1	0	0	copy fasta	KLF9	chr9	70379604	70419657
KLF9_chr9_70379604_70419657	0/0	t0031	4467	1	0	0	1	0	0	copy fasta	KLF9	chr9	70379604	70419657
KLF9_chr9_70379604_70419657	0/0	t0032	4469	1	0	0	1	0	0	copy fasta	KLF9	chr9	70379604	70419657
KLF9_chr9_70379604_70419657	0/0	t0033	4468	1	1	0	0	0	0	copy fasta	KLF9	chr9	70379604	70419657
KLF9_chr9_70379604_70419657	0/0	t0034	4467	1	0	0	0	0	1	copy fasta	KLF9	chr9	70379604	70419657
KLF9_chr9_70379604_70419657	0/0	t0035	4467	1	1	0	0	0	0	copy fasta	KLF9	chr9	70379604	70419657
KLF9_chr9_70379604_70419657	0/0	t0036	4467	1	1	0	0	0	0	copy fasta	KLF9	chr9	70379604	70419657
KLF9_chr9_70379604_70419657	0/0	t0037	4468	1	0	0	1	0	0	copy fasta	KLF9	chr9	70379604	70419657
KLF9_chr9_70379604_70419657	0/0	t0038	4467	1	0	1	0	0	0	copy fasta	KLF9	chr9	70379604	70419657
KLF9_chr9_70379604_70419657	0/0	t0039	4468	1	1	0	0	0	0	copy fasta	KLF9	chr9	70379604	70419657
KLF9_chr9_70379604_70419657	0/0	t0040	4465	1	1	0	0	0	0	copy fasta	KLF9	chr9	70379604	70419657
KLHDC10_chr7_130065534_130140705	0/1	t0001	5071	97	9	23	52	5	7	copy fasta	KLHDC10	chr7	130065534	130140705
KLHDC10_chr7_130065534_130140705	0/0	t0002	5069	63	7	8	40	1	7	copy fasta	KLHDC10	chr7	130065534	130140705
KLHDC10_chr7_130065534_130140705	0/0	t0003	5069	47	0	8	34	0	5	copy fasta	KLHDC10	chr7	130065534	130140705
KLHDC10_chr7_130065534_130140705	0/0	t0004	5072	23	4	9	0	5	5	copy fasta	KLHDC10	chr7	130065534	130140705
KLHDC10_chr7_130065534_130140705	1/0	t0005	5070	12	5	0	6	0	0	copy fasta	KLHDC10	chr7	130065534	130140705
KLHDC10_chr7_130065534_130140705	0/0	t0006	5072	10	1	5	0	0	4	copy fasta	KLHDC10	chr7	130065534	130140705
KLHDC10_chr7_130065534_130140705	0/0	t0007	5069	9	6	2	1	0	0	copy fasta	KLHDC10	chr7	130065534	130140705
KLHDC10_chr7_130065534_130140705	0/0	t0008	5076	8	8	0	0	0	0	copy fasta	KLHDC10	chr7	130065534	130140705
KLHDC10_chr7_130065534_130140705	0/0	t0009	5069	7	0	3	4	0	0	copy fasta	KLHDC10	chr7	130065534	130140705
KLHDC10_chr7_130065534_130140705	0/0	t0010	5068	6	3	3	0	0	0	copy fasta	KLHDC10	chr7	130065534	130140705
KLHDC10_chr7_130065534_130140705	0/0	t0011	5070	6	0	0	4	0	2	copy fasta	KLHDC10	chr7	130065534	130140705
KLHDC10_chr7_130065534_130140705	0/0	t0012	5072	5	0	2	0	2	1	copy fasta	KLHDC10	chr7	130065534	130140705
KLHDC10_chr7_130065534_130140705	0/0	t0013	5077	5	5	0	0	0	0	copy fasta	KLHDC10	chr7	130065534	130140705
KLHDC10_chr7_130065534_130140705	0/0	t0014	5071	5	1	1	0	0	3	copy fasta	KLHDC10	chr7	130065534	130140705