JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KLHDC10_chr7_130065534_130140705	0/0	t0015	5077	5	4	1	0	0	0	copy fasta	KLHDC10	chr7	130065534	130140705
KLHDC10_chr7_130065534_130140705	0/0	t0016	5069	4	3	1	0	0	0	copy fasta	KLHDC10	chr7	130065534	130140705
KLHDC10_chr7_130065534_130140705	0/0	t0017	5069	4	0	0	4	0	0	copy fasta	KLHDC10	chr7	130065534	130140705
KLHDC10_chr7_130065534_130140705	0/0	t0018	5069	3	3	0	0	0	0	copy fasta	KLHDC10	chr7	130065534	130140705
KLHDC10_chr7_130065534_130140705	0/0	t0019	5068	3	2	1	0	0	0	copy fasta	KLHDC10	chr7	130065534	130140705
KLHDC10_chr7_130065534_130140705	0/0	t0020	5069	3	0	2	1	0	0	copy fasta	KLHDC10	chr7	130065534	130140705
KLHDC10_chr7_130065534_130140705	0/0	t0021	5070	3	3	0	0	0	0	copy fasta	KLHDC10	chr7	130065534	130140705
KLHDC10_chr7_130065534_130140705	0/0	t0022	5069	3	0	0	3	0	0	copy fasta	KLHDC10	chr7	130065534	130140705
KLHDC10_chr7_130065534_130140705	0/0	t0023	5073	3	3	0	0	0	0	copy fasta	KLHDC10	chr7	130065534	130140705
KLHDC10_chr7_130065534_130140705	0/0	t0024	5072	2	2	0	0	0	0	copy fasta	KLHDC10	chr7	130065534	130140705
KLHDC10_chr7_130065534_130140705	0/0	t0025	5071	2	0	1	0	1	0	copy fasta	KLHDC10	chr7	130065534	130140705
KLHDC10_chr7_130065534_130140705	0/0	t0026	5071	2	2	0	0	0	0	copy fasta	KLHDC10	chr7	130065534	130140705
KLHDC10_chr7_130065534_130140705	0/0	t0027	5070	2	2	0	0	0	0	copy fasta	KLHDC10	chr7	130065534	130140705
KLHDC10_chr7_130065534_130140705	0/0	t0028	5071	2	0	0	0	0	2	copy fasta	KLHDC10	chr7	130065534	130140705
KLHDC10_chr7_130065534_130140705	0/0	t0029	5072	2	2	0	0	0	0	copy fasta	KLHDC10	chr7	130065534	130140705
KLHDC10_chr7_130065534_130140705	0/0	t0030	5077	2	2	0	0	0	0	copy fasta	KLHDC10	chr7	130065534	130140705
KLHDC10_chr7_130065534_130140705	0/0	t0031	5070	2	0	2	0	0	0	copy fasta	KLHDC10	chr7	130065534	130140705
KLHDC10_chr7_130065534_130140705	0/0	t0032	5074	2	2	0	0	0	0	copy fasta	KLHDC10	chr7	130065534	130140705
KLHDC10_chr7_130065534_130140705	0/0	t0033	5070	2	2	0	0	0	0	copy fasta	KLHDC10	chr7	130065534	130140705
KLHDC10_chr7_130065534_130140705	0/0	t0034	5068	2	0	1	0	0	1	copy fasta	KLHDC10	chr7	130065534	130140705
KLHDC10_chr7_130065534_130140705	0/0	t0035	5052	1	0	0	1	0	0	copy fasta	KLHDC10	chr7	130065534	130140705
KLHDC10_chr7_130065534_130140705	0/0	t0036	5069	1	0	0	1	0	0	copy fasta	KLHDC10	chr7	130065534	130140705
KLHDC10_chr7_130065534_130140705	0/0	t0037	5077	1	1	0	0	0	0	copy fasta	KLHDC10	chr7	130065534	130140705
KLHDC10_chr7_130065534_130140705	0/0	t0038	5071	1	0	1	0	0	0	copy fasta	KLHDC10	chr7	130065534	130140705
KLHDC10_chr7_130065534_130140705	0/0	t0039	5070	1	0	0	1	0	0	copy fasta	KLHDC10	chr7	130065534	130140705
KLHDC10_chr7_130065534_130140705	0/0	t0040	5068	1	1	0	0	0	0	copy fasta	KLHDC10	chr7	130065534	130140705
KLHDC10_chr7_130065534_130140705	0/0	t0041	5070	1	1	0	0	0	0	copy fasta	KLHDC10	chr7	130065534	130140705
KLHDC10_chr7_130065534_130140705	0/0	t0042	5070	1	0	0	1	0	0	copy fasta	KLHDC10	chr7	130065534	130140705
KLHDC10_chr7_130065534_130140705	0/0	t0043	5069	1	1	0	0	0	0	copy fasta	KLHDC10	chr7	130065534	130140705
KLHDC10_chr7_130065534_130140705	0/0	t0044	5076	1	1	0	0	0	0	copy fasta	KLHDC10	chr7	130065534	130140705
KLHDC10_chr7_130065534_130140705	0/0	t0045	5075	1	1	0	0	0	0	copy fasta	KLHDC10	chr7	130065534	130140705
KLHDC10_chr7_130065534_130140705	0/0	t0046	5068	1	0	0	0	0	1	copy fasta	KLHDC10	chr7	130065534	130140705
KLHDC10_chr7_130065534_130140705	0/0	t0047	5069	1	1	0	0	0	0	copy fasta	KLHDC10	chr7	130065534	130140705
KLHDC10_chr7_130065534_130140705	0/0	t0048	5074	1	1	0	0	0	0	copy fasta	KLHDC10	chr7	130065534	130140705
KLHDC10_chr7_130065534_130140705	0/0	t0049	5073	1	0	0	0	0	1	copy fasta	KLHDC10	chr7	130065534	130140705
KLHDC10_chr7_130065534_130140705	0/0	t0050	5077	1	1	0	0	0	0	copy fasta	KLHDC10	chr7	130065534	130140705
KLHDC10_chr7_130065534_130140705	0/0	t0051	5070	1	0	1	0	0	0	copy fasta	KLHDC10	chr7	130065534	130140705
KLHDC10_chr7_130065534_130140705	0/0	t0052	5077	1	1	0	0	0	0	copy fasta	KLHDC10	chr7	130065534	130140705
KLHDC10_chr7_130065534_130140705	0/0	t0053	5069	1	1	0	0	0	0	copy fasta	KLHDC10	chr7	130065534	130140705
KLHDC10_chr7_130065534_130140705	0/0	t0054	5070	1	1	0	0	0	0	copy fasta	KLHDC10	chr7	130065534	130140705
KLHDC10_chr7_130065534_130140705	0/0	t0055	5070	1	0	1	0	0	0	copy fasta	KLHDC10	chr7	130065534	130140705
KLHDC10_chr7_130065534_130140705	0/0	t0056	5069	1	0	0	0	0	1	copy fasta	KLHDC10	chr7	130065534	130140705
KLHDC10_chr7_130065534_130140705	0/0	t0057	5071	1	0	0	1	0	0	copy fasta	KLHDC10	chr7	130065534	130140705
KLHDC10_chr7_130065534_130140705	0/0	t0058	5069	1	0	0	0	0	1	copy fasta	KLHDC10	chr7	130065534	130140705
KLHDC10_chr7_130065534_130140705	0/0	t0059	5069	1	0	0	1	0	0	copy fasta	KLHDC10	chr7	130065534	130140705
KLHDC10_chr7_130065534_130140705	0/0	t0060	5068	1	0	0	1	0	0	copy fasta	KLHDC10	chr7	130065534	130140705
KLHDC10_chr7_130065534_130140705	0/0	t0061	5071	1	0	0	1	0	0	copy fasta	KLHDC10	chr7	130065534	130140705
KLHDC10_chr7_130065534_130140705	0/0	t0062	5070	1	1	0	0	0	0	copy fasta	KLHDC10	chr7	130065534	130140705
KLHDC10_chr7_130065534_130140705	0/0	t0063	5068	1	0	0	1	0	0	copy fasta	KLHDC10	chr7	130065534	130140705
KLHDC10_chr7_130065534_130140705	0/0	t0064	5069	1	0	0	0	0	1	copy fasta	KLHDC10	chr7	130065534	130140705