JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KLHDC1_chr14_49688120_49758150	1/0	t0001	1454	200	80	48	46	10	15	copy fasta	KLHDC1	chr14	49688120	49758150
KLHDC1_chr14_49688120_49758150	0/0	t0002	1454	2	0	0	1	0	1	copy fasta	KLHDC1	chr14	49688120	49758150
KLHDC1_chr14_49688120_49758150	0/0	t0003	1454	2	0	0	2	0	0	copy fasta	KLHDC1	chr14	49688120	49758150
KLHDC1_chr14_49688120_49758150	0/0	t0004	1454	1	0	0	1	0	0	copy fasta	KLHDC1	chr14	49688120	49758150
KLHDC1_chr14_49688120_49758150	0/0	t0005	1454	1	1	0	0	0	0	copy fasta	KLHDC1	chr14	49688120	49758150
KLHDC1_chr14_49688120_49758150	0/1	t0006	1454	1	0	0	0	0	0	copy fasta	KLHDC1	chr14	49688120	49758150
KLHDC1_chr14_49688120_49758150	0/0	t0007	1437	1	1	0	0	0	0	copy fasta	KLHDC1	chr14	49688120	49758150
KLHDC2_chr14_49763153_49791385	0/1	t0001	3747	195	40	27	88	9	30	copy fasta	KLHDC2	chr14	49763153	49791385
KLHDC2_chr14_49763153_49791385	0/0	t0002	3748	48	11	13	18	2	4	copy fasta	KLHDC2	chr14	49763153	49791385
KLHDC2_chr14_49763153_49791385	0/0	t0003	3747	24	9	10	1	3	1	copy fasta	KLHDC2	chr14	49763153	49791385
KLHDC2_chr14_49763153_49791385	0/0	t0004	3746	13	7	6	0	0	0	copy fasta	KLHDC2	chr14	49763153	49791385
KLHDC2_chr14_49763153_49791385	0/0	t0005	3748	8	8	0	0	0	0	copy fasta	KLHDC2	chr14	49763153	49791385
KLHDC2_chr14_49763153_49791385	0/0	t0006	3745	6	0	3	3	0	0	copy fasta	KLHDC2	chr14	49763153	49791385
KLHDC2_chr14_49763153_49791385	0/0	t0007	3750	6	0	0	0	0	6	copy fasta	KLHDC2	chr14	49763153	49791385
KLHDC2_chr14_49763153_49791385	0/0	t0008	3748	6	6	0	0	0	0	copy fasta	KLHDC2	chr14	49763153	49791385
KLHDC2_chr14_49763153_49791385	0/0	t0009	3748	5	5	0	0	0	0	copy fasta	KLHDC2	chr14	49763153	49791385
KLHDC2_chr14_49763153_49791385	0/0	t0010	3747	3	0	3	0	0	0	copy fasta	KLHDC2	chr14	49763153	49791385
KLHDC2_chr14_49763153_49791385	0/0	t0011	3746	3	0	0	3	0	0	copy fasta	KLHDC2	chr14	49763153	49791385
KLHDC2_chr14_49763153_49791385	0/0	t0012	3747	2	0	0	2	0	0	copy fasta	KLHDC2	chr14	49763153	49791385
KLHDC2_chr14_49763153_49791385	0/0	t0013	3747	1	0	0	0	0	1	copy fasta	KLHDC2	chr14	49763153	49791385
KLHDC2_chr14_49763153_49791385	0/0	t0014	3747	1	1	0	0	0	0	copy fasta	KLHDC2	chr14	49763153	49791385
KLHDC2_chr14_49763153_49791385	0/0	t0015	3747	1	1	0	0	0	0	copy fasta	KLHDC2	chr14	49763153	49791385
KLHDC2_chr14_49763153_49791385	0/0	t0016	3747	1	1	0	0	0	0	copy fasta	KLHDC2	chr14	49763153	49791385
KLHDC2_chr14_49763153_49791385	0/0	t0017	3747	1	0	0	1	0	0	copy fasta	KLHDC2	chr14	49763153	49791385
KLHDC2_chr14_49763153_49791385	0/0	t0018	3747	1	0	0	1	0	0	copy fasta	KLHDC2	chr14	49763153	49791385
KLHDC2_chr14_49763153_49791385	0/0	t0019	3747	1	0	0	1	0	0	copy fasta	KLHDC2	chr14	49763153	49791385
KLHDC2_chr14_49763153_49791385	0/0	t0020	3747	1	0	0	1	0	0	copy fasta	KLHDC2	chr14	49763153	49791385
KLHDC2_chr14_49763153_49791385	0/0	t0021	3747	1	1	0	0	0	0	copy fasta	KLHDC2	chr14	49763153	49791385
KLHDC2_chr14_49763153_49791385	0/0	t0022	3746	1	1	0	0	0	0	copy fasta	KLHDC2	chr14	49763153	49791385
KLHDC2_chr14_49763153_49791385	0/0	t0023	3748	1	1	0	0	0	0	copy fasta	KLHDC2	chr14	49763153	49791385
KLHDC2_chr14_49763153_49791385	0/0	t0024	3750	1	0	0	0	0	1	copy fasta	KLHDC2	chr14	49763153	49791385
KLHDC2_chr14_49763153_49791385	0/0	t0025	3751	1	1	0	0	0	0	copy fasta	KLHDC2	chr14	49763153	49791385
KLHDC2_chr14_49763153_49791385	0/0	t0026	3748	1	1	0	0	0	0	copy fasta	KLHDC2	chr14	49763153	49791385
KLHDC2_chr14_49763153_49791385	0/0	t0027	3747	1	0	0	0	0	1	copy fasta	KLHDC2	chr14	49763153	49791385
KLHDC2_chr14_49763153_49791385	0/0	t0028	3747	1	0	0	1	0	0	copy fasta	KLHDC2	chr14	49763153	49791385
KLHDC2_chr14_49763153_49791385	1/0	t0029	3749	1	0	0	0	0	0	copy fasta	KLHDC2	chr14	49763153	49791385
KLHDC3_chr6_43009249_43026294	1/0	t0001	721	272	72	66	104	7	22	copy fasta	KLHDC3	chr6	43009249	43026294
KLHDC3_chr6_43009249_43026294	0/1	t0002	721	33	9	1	16	1	5	copy fasta	KLHDC3	chr6	43009249	43026294
KLHDC3_chr6_43009249_43026294	0/0	t0003	721	4	4	0	0	0	0	copy fasta	KLHDC3	chr6	43009249	43026294
KLHDC3_chr6_43009249_43026294	0/0	t0004	721	2	2	0	0	0	0	copy fasta	KLHDC3	chr6	43009249	43026294
KLHDC3_chr6_43009249_43026294	0/0	t0005	721	2	2	0	0	0	0	copy fasta	KLHDC3	chr6	43009249	43026294
KLHDC3_chr6_43009249_43026294	0/0	t0006	721	1	0	0	1	0	0	copy fasta	KLHDC3	chr6	43009249	43026294
KLHDC3_chr6_43009249_43026294	0/0	t0007	721	1	0	1	0	0	0	copy fasta	KLHDC3	chr6	43009249	43026294
KLHDC3_chr6_43009249_43026294	0/0	t0008	721	1	0	0	1	0	0	copy fasta	KLHDC3	chr6	43009249	43026294
KLHDC3_chr6_43009249_43026294	0/0	t0009	721	1	1	0	0	0	0	copy fasta	KLHDC3	chr6	43009249	43026294
KLHDC3_chr6_43009249_43026294	0/0	t0010	721	1	0	0	0	0	1	copy fasta	KLHDC3	chr6	43009249	43026294
KLHDC4_chr16_87702812_87770986	1/1	t0001	361	314	82	54	134	7	35	copy fasta	KLHDC4	chr16	87702812	87770986
KLHDC4_chr16_87702812_87770986	0/0	t0002	361	51	1	15	22	5	8	copy fasta	KLHDC4	chr16	87702812	87770986
KLHDC4_chr16_87702812_87770986	0/0	t0003	361	8	6	2	0	0	0	copy fasta	KLHDC4	chr16	87702812	87770986
KLHDC4_chr16_87702812_87770986	0/0	t0004	361	3	3	0	0	0	0	copy fasta	KLHDC4	chr16	87702812	87770986