JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KLHDC4_chr16_87702812_87770986	0/0	t0005	361	2	0	0	0	0	2	copy fasta	KLHDC4	chr16	87702812	87770986
KLHDC4_chr16_87702812_87770986	0/0	t0006	361	1	0	1	0	0	0	copy fasta	KLHDC4	chr16	87702812	87770986
KLHDC4_chr16_87702812_87770986	0/0	t0007	361	1	0	0	0	0	1	copy fasta	KLHDC4	chr16	87702812	87770986
KLHDC7A_chr1_18475930_18490974	0/0	t0001	2712	144	8	15	109	3	9	copy fasta	KLHDC7A	chr1	18475930	18490974
KLHDC7A_chr1_18475930_18490974	1/0	t0002	2712	94	32	26	16	2	17	copy fasta	KLHDC7A	chr1	18475930	18490974
KLHDC7A_chr1_18475930_18490974	0/0	t0003	2712	67	16	15	22	7	7	copy fasta	KLHDC7A	chr1	18475930	18490974
KLHDC7A_chr1_18475930_18490974	0/0	t0004	2712	39	2	4	29	0	4	copy fasta	KLHDC7A	chr1	18475930	18490974
KLHDC7A_chr1_18475930_18490974	0/0	t0005	2712	30	7	8	8	3	4	copy fasta	KLHDC7A	chr1	18475930	18490974
KLHDC7A_chr1_18475930_18490974	0/0	t0006	2712	8	1	0	0	2	5	copy fasta	KLHDC7A	chr1	18475930	18490974
KLHDC7A_chr1_18475930_18490974	0/0	t0007	2712	7	0	0	7	0	0	copy fasta	KLHDC7A	chr1	18475930	18490974
KLHDC7A_chr1_18475930_18490974	0/1	t0008	2712	6	1	3	0	0	1	copy fasta	KLHDC7A	chr1	18475930	18490974
KLHDC7A_chr1_18475930_18490974	0/0	t0009	2712	5	5	0	0	0	0	copy fasta	KLHDC7A	chr1	18475930	18490974
KLHDC7A_chr1_18475930_18490974	0/0	t0010	2712	5	4	1	0	0	0	copy fasta	KLHDC7A	chr1	18475930	18490974
KLHDC7A_chr1_18475930_18490974	0/0	t0011	2712	5	4	1	0	0	0	copy fasta	KLHDC7A	chr1	18475930	18490974
KLHDC7A_chr1_18475930_18490974	0/0	t0012	2712	4	1	3	0	0	0	copy fasta	KLHDC7A	chr1	18475930	18490974
KLHDC7A_chr1_18475930_18490974	0/0	t0013	2716	3	2	1	0	0	0	copy fasta	KLHDC7A	chr1	18475930	18490974
KLHDC7A_chr1_18475930_18490974	0/0	t0014	2716	2	2	0	0	0	0	copy fasta	KLHDC7A	chr1	18475930	18490974
KLHDC7A_chr1_18475930_18490974	0/0	t0015	2712	2	0	2	0	0	0	copy fasta	KLHDC7A	chr1	18475930	18490974
KLHDC7A_chr1_18475930_18490974	0/0	t0016	2712	2	2	0	0	0	0	copy fasta	KLHDC7A	chr1	18475930	18490974
KLHDC7A_chr1_18475930_18490974	0/0	t0017	2712	2	0	0	2	0	0	copy fasta	KLHDC7A	chr1	18475930	18490974
KLHDC7A_chr1_18475930_18490974	0/0	t0018	2712	1	1	0	0	0	0	copy fasta	KLHDC7A	chr1	18475930	18490974
KLHDC7A_chr1_18475930_18490974	0/0	t0019	2712	1	1	0	0	0	0	copy fasta	KLHDC7A	chr1	18475930	18490974
KLHDC7A_chr1_18475930_18490974	0/0	t0020	2712	1	1	0	0	0	0	copy fasta	KLHDC7A	chr1	18475930	18490974
KLHDC7A_chr1_18475930_18490974	0/0	t0021	2712	1	0	0	0	0	1	copy fasta	KLHDC7A	chr1	18475930	18490974
KLHDC7A_chr1_18475930_18490974	0/0	t0022	2712	1	0	1	0	0	0	copy fasta	KLHDC7A	chr1	18475930	18490974
KLHDC7A_chr1_18475930_18490974	0/0	t0023	2712	1	0	0	0	1	0	copy fasta	KLHDC7A	chr1	18475930	18490974
KLHDC7A_chr1_18475930_18490974	0/0	t0024	2716	1	1	0	0	0	0	copy fasta	KLHDC7A	chr1	18475930	18490974
KLHDC7A_chr1_18475930_18490974	0/0	t0025	2712	1	0	0	1	0	0	copy fasta	KLHDC7A	chr1	18475930	18490974
KLHDC7A_chr1_18475930_18490974	0/0	t0026	2712	1	0	0	1	0	0	copy fasta	KLHDC7A	chr1	18475930	18490974
KLHDC7A_chr1_18475930_18490974	0/0	t0027	2712	1	1	0	0	0	0	copy fasta	KLHDC7A	chr1	18475930	18490974
KLHDC7A_chr1_18475930_18490974	0/0	t0028	2712	1	1	0	0	0	0	copy fasta	KLHDC7A	chr1	18475930	18490974
KLHDC7A_chr1_18475930_18490974	0/0	t0029	2712	1	1	0	0	0	0	copy fasta	KLHDC7A	chr1	18475930	18490974
KLHDC7A_chr1_18475930_18490974	0/0	t0030	2712	1	0	0	1	0	0	copy fasta	KLHDC7A	chr1	18475930	18490974
KLHDC7B_chr22_50540899_50556023	0/0	t0001	1409	173	14	39	99	7	14	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	t0002	1418	66	0	9	49	0	8	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	1/0	t0003	1418	62	23	13	10	7	8	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	t0004	1418	40	0	11	22	1	6	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	t0005	1418	18	14	2	0	0	2	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	t0006	1418	15	12	1	2	0	0	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	t0007	1418	12	7	1	0	1	3	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/1	t0008	1418	8	4	2	0	0	1	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	t0009	1418	7	6	1	0	0	0	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	t0010	1407	4	0	0	3	0	1	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	t0011	1409	4	2	0	2	0	0	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	t0012	1409	4	4	0	0	0	0	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	t0013	1418	4	3	1	0	0	0	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	t0014	1409	2	2	0	0	0	0	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	t0015	1418	2	2	0	0	0	0	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	t0016	1409	1	0	0	0	0	1	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	t0017	1409	1	0	0	1	0	0	copy fasta	KLHDC7B	chr22	50540899	50556023