JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KLHDC7B_chr22_50540899_50556023	0/0	t0018	1409	1	0	0	0	0	1	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	t0019	1409	1	0	0	0	0	1	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	t0020	1407	1	1	0	0	0	0	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	t0021	1407	1	1	0	0	0	0	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	t0022	1418	1	0	0	0	0	1	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	t0023	1418	1	0	0	0	0	1	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	t0024	1418	1	1	0	0	0	0	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	t0025	1416	1	1	0	0	0	0	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC7B_chr22_50540899_50556023	0/0	t0026	1418	1	1	0	0	0	0	copy fasta	KLHDC7B	chr22	50540899	50556023
KLHDC8A_chr1_205331061_205361922	0/1	t0001	1918	137	16	27	75	7	11	copy fasta	KLHDC8A	chr1	205331061	205361922
KLHDC8A_chr1_205331061_205361922	0/0	t0002	1918	125	17	23	65	7	13	copy fasta	KLHDC8A	chr1	205331061	205361922
KLHDC8A_chr1_205331061_205361922	1/0	t0003	1918	47	8	3	25	1	9	copy fasta	KLHDC8A	chr1	205331061	205361922
KLHDC8A_chr1_205331061_205361922	0/0	t0004	1918	22	11	6	0	1	4	copy fasta	KLHDC8A	chr1	205331061	205361922
KLHDC8A_chr1_205331061_205361922	0/0	t0005	1918	14	12	2	0	0	0	copy fasta	KLHDC8A	chr1	205331061	205361922
KLHDC8A_chr1_205331061_205361922	0/0	t0006	1918	14	14	0	0	0	0	copy fasta	KLHDC8A	chr1	205331061	205361922
KLHDC8A_chr1_205331061_205361922	0/0	t0007	1918	13	8	4	0	0	1	copy fasta	KLHDC8A	chr1	205331061	205361922
KLHDC8A_chr1_205331061_205361922	0/0	t0008	1918	8	5	2	0	0	1	copy fasta	KLHDC8A	chr1	205331061	205361922
KLHDC8A_chr1_205331061_205361922	0/0	t0009	1918	6	2	2	1	0	1	copy fasta	KLHDC8A	chr1	205331061	205361922
KLHDC8A_chr1_205331061_205361922	0/0	t0010	1918	5	1	1	0	2	1	copy fasta	KLHDC8A	chr1	205331061	205361922
KLHDC8A_chr1_205331061_205361922	0/0	t0011	1918	4	0	0	0	0	4	copy fasta	KLHDC8A	chr1	205331061	205361922
KLHDC8A_chr1_205331061_205361922	0/0	t0012	1918	1	1	0	0	0	0	copy fasta	KLHDC8A	chr1	205331061	205361922
KLHDC8A_chr1_205331061_205361922	0/0	t0013	1918	1	0	0	0	0	1	copy fasta	KLHDC8A	chr1	205331061	205361922
KLHDC8A_chr1_205331061_205361922	0/0	t0014	1918	1	1	0	0	0	0	copy fasta	KLHDC8A	chr1	205331061	205361922
KLHDC8A_chr1_205331061_205361922	0/0	t0015	1918	1	1	0	0	0	0	copy fasta	KLHDC8A	chr1	205331061	205361922
KLHDC8A_chr1_205331061_205361922	0/0	t0016	1918	1	0	0	1	0	0	copy fasta	KLHDC8A	chr1	205331061	205361922
KLHDC8A_chr1_205331061_205361922	0/0	t0017	1918	1	1	0	0	0	0	copy fasta	KLHDC8A	chr1	205331061	205361922
KLHDC8A_chr1_205331061_205361922	0/0	t0018	1918	1	0	0	1	0	0	copy fasta	KLHDC8A	chr1	205331061	205361922
KLHDC8A_chr1_205331061_205361922	0/0	t0019	1918	1	0	0	1	0	0	copy fasta	KLHDC8A	chr1	205331061	205361922
KLHDC8A_chr1_205331061_205361922	0/0	t0020	1918	1	0	0	1	0	0	copy fasta	KLHDC8A	chr1	205331061	205361922
KLHDC8B_chr3_49166598_49181486	0/0	t0001	908	157	48	27	48	6	28	copy fasta	KLHDC8B	chr3	49166598	49181486
KLHDC8B_chr3_49166598_49181486	1/1	t0002	908	49	26	12	1	5	3	copy fasta	KLHDC8B	chr3	49166598	49181486
KLHDC8B_chr3_49166598_49181486	0/0	t0003	908	37	5	7	19	3	3	copy fasta	KLHDC8B	chr3	49166598	49181486
KLHDC8B_chr3_49166598_49181486	0/0	t0004	908	4	4	0	0	0	0	copy fasta	KLHDC8B	chr3	49166598	49181486
KLHDC8B_chr3_49166598_49181486	0/0	t0005	908	1	1	0	0	0	0	copy fasta	KLHDC8B	chr3	49166598	49181486
KLHDC8B_chr3_49166598_49181486	0/0	t0006	908	1	0	1	0	0	0	copy fasta	KLHDC8B	chr3	49166598	49181486
KLHDC8B_chr3_49166598_49181486	0/0	t0007	908	1	0	1	0	0	0	copy fasta	KLHDC8B	chr3	49166598	49181486
KLHDC9_chr1_161093361_161105346	1/0	t0001	298	225	57	41	90	7	29	copy fasta	KLHDC9	chr1	161093361	161105346
KLHDC9_chr1_161093361_161105346	0/1	t0002	298	164	23	36	88	6	10	copy fasta	KLHDC9	chr1	161093361	161105346
KLHDC9_chr1_161093361_161105346	0/0	t0003	298	8	0	3	3	1	1	copy fasta	KLHDC9	chr1	161093361	161105346
KLHDC9_chr1_161093361_161105346	0/0	t0004	298	4	0	0	4	0	0	copy fasta	KLHDC9	chr1	161093361	161105346
KLHDC9_chr1_161093361_161105346	0/0	t0005	298	1	0	0	1	0	0	copy fasta	KLHDC9	chr1	161093361	161105346
KLHL10_chr17_41832825_41853384	1/1	t0001	186	394	96	78	164	14	40	copy fasta	KLHL10	chr17	41832825	41853384
KLHL11_chr17_41843518_41870423	0/0	t0001	5276	225	44	50	92	7	32	copy fasta	KLHL11	chr17	41843518	41870423
KLHL11_chr17_41843518_41870423	0/0	t0002	5276	33	4	6	16	1	6	copy fasta	KLHL11	chr17	41843518	41870423
KLHL11_chr17_41843518_41870423	0/0	t0003	5276	27	3	7	13	1	3	copy fasta	KLHL11	chr17	41843518	41870423
KLHL11_chr17_41843518_41870423	0/0	t0004	5276	14	14	0	0	0	0	copy fasta	KLHL11	chr17	41843518	41870423
KLHL11_chr17_41843518_41870423	1/0	t0005	5276	13	6	4	0	1	1	copy fasta	KLHL11	chr17	41843518	41870423
KLHL11_chr17_41843518_41870423	0/1	t0006	5277	9	0	4	3	1	0	copy fasta	KLHL11	chr17	41843518	41870423
KLHL11_chr17_41843518_41870423	0/0	t0007	5276	4	1	2	0	1	0	copy fasta	KLHL11	chr17	41843518	41870423
KLHL11_chr17_41843518_41870423	0/0	t0008	5277	3	1	1	1	0	0	copy fasta	KLHL11	chr17	41843518	41870423