JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KLHL13_chrX_117892813_118121810	0/0	t0004	1423	5	4	1	0	0	0	copy fasta	KLHL13	chrX	117892813	118121810
KLHL13_chrX_117892813_118121810	0/0	t0005	1423	5	0	0	5	0	0	copy fasta	KLHL13	chrX	117892813	118121810
KLHL13_chrX_117892813_118121810	0/0	t0006	1423	1	1	0	0	0	0	copy fasta	KLHL13	chrX	117892813	118121810
KLHL14_chr18_32667673_32778023	1/0	t0001	2385	117	39	36	30	2	9	copy fasta	KLHL14	chr18	32667673	32778023
KLHL14_chr18_32667673_32778023	0/1	t0002	2386	64	35	15	12	0	1	copy fasta	KLHL14	chr18	32667673	32778023
KLHL14_chr18_32667673_32778023	0/0	t0003	2386	11	11	0	0	0	0	copy fasta	KLHL14	chr18	32667673	32778023
KLHL14_chr18_32667673_32778023	0/0	t0004	2386	3	1	1	1	0	0	copy fasta	KLHL14	chr18	32667673	32778023
KLHL14_chr18_32667673_32778023	0/0	t0005	2386	3	3	0	0	0	0	copy fasta	KLHL14	chr18	32667673	32778023
KLHL14_chr18_32667673_32778023	0/0	t0006	2386	1	1	0	0	0	0	copy fasta	KLHL14	chr18	32667673	32778023
KLHL14_chr18_32667673_32778023	0/0	t0007	2385	1	0	1	0	0	0	copy fasta	KLHL14	chr18	32667673	32778023
KLHL14_chr18_32667673_32778023	0/0	t0008	2385	1	1	0	0	0	0	copy fasta	KLHL14	chr18	32667673	32778023
KLHL14_chr18_32667673_32778023	0/0	t0009	2386	1	1	0	0	0	0	copy fasta	KLHL14	chr18	32667673	32778023
KLHL14_chr18_32667673_32778023	0/0	t0010	2385	1	0	1	0	0	0	copy fasta	KLHL14	chr18	32667673	32778023
KLHL14_chr18_32667673_32778023	0/0	t0011	2385	1	0	0	1	0	0	copy fasta	KLHL14	chr18	32667673	32778023
KLHL15_chrX_23978720_24032186	0/0	t0001	4461	86	15	4	59	0	8	copy fasta	KLHL15	chrX	23978720	24032186
KLHL15_chrX_23978720_24032186	1/0	t0002	4458	77	6	24	37	3	6	copy fasta	KLHL15	chrX	23978720	24032186
KLHL15_chrX_23978720_24032186	0/0	t0003	4465	37	16	1	11	0	9	copy fasta	KLHL15	chrX	23978720	24032186
KLHL15_chrX_23978720_24032186	0/0	t0004	4461	32	15	9	6	1	1	copy fasta	KLHL15	chrX	23978720	24032186
KLHL15_chrX_23978720_24032186	0/0	t0005	4461	20	2	10	1	4	3	copy fasta	KLHL15	chrX	23978720	24032186
KLHL15_chrX_23978720_24032186	0/0	t0006	4458	5	0	1	4	0	0	copy fasta	KLHL15	chrX	23978720	24032186
KLHL15_chrX_23978720_24032186	0/0	t0007	4459	4	1	2	0	1	0	copy fasta	KLHL15	chrX	23978720	24032186
KLHL15_chrX_23978720_24032186	0/0	t0008	4461	3	3	0	0	0	0	copy fasta	KLHL15	chrX	23978720	24032186
KLHL15_chrX_23978720_24032186	0/0	t0009	4463	2	0	2	0	0	0	copy fasta	KLHL15	chrX	23978720	24032186
KLHL15_chrX_23978720_24032186	0/0	t0010	4459	2	0	2	0	0	0	copy fasta	KLHL15	chrX	23978720	24032186
KLHL15_chrX_23978720_24032186	0/0	t0011	4461	2	2	0	0	0	0	copy fasta	KLHL15	chrX	23978720	24032186
KLHL15_chrX_23978720_24032186	0/0	t0012	4462	1	0	0	1	0	0	copy fasta	KLHL15	chrX	23978720	24032186
KLHL15_chrX_23978720_24032186	0/0	t0013	4466	1	0	0	1	0	0	copy fasta	KLHL15	chrX	23978720	24032186
KLHL15_chrX_23978720_24032186	0/0	t0014	4462	1	1	0	0	0	0	copy fasta	KLHL15	chrX	23978720	24032186
KLHL15_chrX_23978720_24032186	0/0	t0015	4460	1	0	0	1	0	0	copy fasta	KLHL15	chrX	23978720	24032186
KLHL15_chrX_23978720_24032186	0/0	t0016	4461	1	1	0	0	0	0	copy fasta	KLHL15	chrX	23978720	24032186
KLHL15_chrX_23978720_24032186	0/0	t0017	4458	1	0	0	1	0	0	copy fasta	KLHL15	chrX	23978720	24032186
KLHL15_chrX_23978720_24032186	0/0	t0018	4457	1	0	0	0	0	1	copy fasta	KLHL15	chrX	23978720	24032186
KLHL15_chrX_23978720_24032186	0/0	t0019	4458	1	0	1	0	0	0	copy fasta	KLHL15	chrX	23978720	24032186
KLHL15_chrX_23978720_24032186	0/1	t0020	4458	1	0	0	0	0	0	copy fasta	KLHL15	chrX	23978720	24032186
KLHL15_chrX_23978720_24032186	0/0	t0021	4465	1	1	0	0	0	0	copy fasta	KLHL15	chrX	23978720	24032186
KLHL15_chrX_23978720_24032186	0/0	t0022	4461	1	0	0	1	0	0	copy fasta	KLHL15	chrX	23978720	24032186
KLHL15_chrX_23978720_24032186	0/0	t0023	4462	1	1	0	0	0	0	copy fasta	KLHL15	chrX	23978720	24032186
KLHL15_chrX_23978720_24032186	0/0	t0024	4461	1	0	1	0	0	0	copy fasta	KLHL15	chrX	23978720	24032186
KLHL15_chrX_23978720_24032186	0/0	t0025	4463	1	0	0	1	0	0	copy fasta	KLHL15	chrX	23978720	24032186
KLHL15_chrX_23978720_24032186	0/0	t0026	4458	1	0	0	1	0	0	copy fasta	KLHL15	chrX	23978720	24032186
KLHL15_chrX_23978720_24032186	0/0	t0027	4465	1	0	1	0	0	0	copy fasta	KLHL15	chrX	23978720	24032186
KLHL17_chr1_955584_970719	0/1	t0001	635	129	4	34	56	10	24	copy fasta	KLHL17	chr1	955584	970719
KLHL17_chr1_955584_970719	0/0	t0002	639	91	41	11	38	0	1	copy fasta	KLHL17	chr1	955584	970719
KLHL17_chr1_955584_970719	0/0	t0003	637	65	6	22	16	8	13	copy fasta	KLHL17	chr1	955584	970719
KLHL17_chr1_955584_970719	0/0	t0004	639	58	8	0	46	0	4	copy fasta	KLHL17	chr1	955584	970719
KLHL17_chr1_955584_970719	0/0	t0005	639	36	15	7	14	0	0	copy fasta	KLHL17	chr1	955584	970719
KLHL17_chr1_955584_970719	1/0	t0006	639	24	4	7	9	0	3	copy fasta	KLHL17	chr1	955584	970719
KLHL17_chr1_955584_970719	0/0	t0007	639	10	7	3	0	0	0	copy fasta	KLHL17	chr1	955584	970719
KLHL17_chr1_955584_970719	0/0	t0008	639	5	5	0	0	0	0	copy fasta	KLHL17	chr1	955584	970719
KLHL17_chr1_955584_970719	0/0	t0009	639	4	4	0	0	0	0	copy fasta	KLHL17	chr1	955584	970719