JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KLHL17_chr1_955584_970719	0/0	t0010	639	2	2	0	0	0	0	copy fasta	KLHL17	chr1	955584	970719
KLHL17_chr1_955584_970719	0/0	t0011	635	1	0	0	0	0	1	copy fasta	KLHL17	chr1	955584	970719
KLHL17_chr1_955584_970719	0/0	t0012	637	1	0	0	1	0	0	copy fasta	KLHL17	chr1	955584	970719
KLHL17_chr1_955584_970719	0/0	t0013	637	1	0	0	0	0	1	copy fasta	KLHL17	chr1	955584	970719
KLHL17_chr1_955584_970719	0/0	t0014	639	1	0	0	1	0	0	copy fasta	KLHL17	chr1	955584	970719
KLHL17_chr1_955584_970719	0/0	t0015	639	1	0	0	1	0	0	copy fasta	KLHL17	chr1	955584	970719
KLHL17_chr1_955584_970719	0/0	t0016	639	1	1	0	0	0	0	copy fasta	KLHL17	chr1	955584	970719
KLHL17_chr1_955584_970719	0/0	t0017	635	1	0	0	0	0	1	copy fasta	KLHL17	chr1	955584	970719
KLHL17_chr1_955584_970719	0/0	t0018	639	1	1	0	0	0	0	copy fasta	KLHL17	chr1	955584	970719
KLHL18_chr3_47277944_47351816	0/0	t0001	2898	168	51	30	63	6	18	copy fasta	KLHL18	chr3	47277944	47351816
KLHL18_chr3_47277944_47351816	0/1	t0002	2898	125	16	24	66	4	14	copy fasta	KLHL18	chr3	47277944	47351816
KLHL18_chr3_47277944_47351816	0/0	t0003	2899	14	14	0	0	0	0	copy fasta	KLHL18	chr3	47277944	47351816
KLHL18_chr3_47277944_47351816	0/0	t0004	2898	10	0	0	10	0	0	copy fasta	KLHL18	chr3	47277944	47351816
KLHL18_chr3_47277944_47351816	0/0	t0005	2898	5	0	0	5	0	0	copy fasta	KLHL18	chr3	47277944	47351816
KLHL18_chr3_47277944_47351816	0/0	t0006	2898	4	0	0	4	0	0	copy fasta	KLHL18	chr3	47277944	47351816
KLHL18_chr3_47277944_47351816	0/0	t0007	2898	3	0	0	3	0	0	copy fasta	KLHL18	chr3	47277944	47351816
KLHL18_chr3_47277944_47351816	0/0	t0008	2898	1	0	0	1	0	0	copy fasta	KLHL18	chr3	47277944	47351816
KLHL18_chr3_47277944_47351816	0/0	t0009	2898	1	0	0	0	0	1	copy fasta	KLHL18	chr3	47277944	47351816
KLHL18_chr3_47277944_47351816	0/0	t0010	2898	1	0	1	0	0	0	copy fasta	KLHL18	chr3	47277944	47351816
KLHL18_chr3_47277944_47351816	0/0	t0011	2898	1	0	1	0	0	0	copy fasta	KLHL18	chr3	47277944	47351816
KLHL18_chr3_47277944_47351816	0/0	t0012	2898	1	0	1	0	0	0	copy fasta	KLHL18	chr3	47277944	47351816
KLHL18_chr3_47277944_47351816	0/0	t0013	2899	1	1	0	0	0	0	copy fasta	KLHL18	chr3	47277944	47351816
KLHL18_chr3_47277944_47351816	0/0	t0014	2898	1	0	1	0	0	0	copy fasta	KLHL18	chr3	47277944	47351816
KLHL18_chr3_47277944_47351816	1/0	t0015	2898	1	0	0	0	0	0	copy fasta	KLHL18	chr3	47277944	47351816
KLHL18_chr3_47277944_47351816	0/0	t0016	2898	1	0	0	0	0	1	copy fasta	KLHL18	chr3	47277944	47351816
KLHL1_chr13_69695597_70113452	0/1	t0001	1859	43	8	14	13	1	6	copy fasta	KLHL1	chr13	69695597	70113452
KLHL1_chr13_69695597_70113452	1/0	t0002	1859	30	10	3	13	0	3	copy fasta	KLHL1	chr13	69695597	70113452
KLHL1_chr13_69695597_70113452	0/0	t0003	1859	15	8	2	4	0	1	copy fasta	KLHL1	chr13	69695597	70113452
KLHL1_chr13_69695597_70113452	0/0	t0004	1859	14	0	6	2	1	5	copy fasta	KLHL1	chr13	69695597	70113452
KLHL1_chr13_69695597_70113452	0/0	t0005	1859	13	0	4	6	0	3	copy fasta	KLHL1	chr13	69695597	70113452
KLHL1_chr13_69695597_70113452	0/0	t0006	1859	13	9	0	1	2	1	copy fasta	KLHL1	chr13	69695597	70113452
KLHL1_chr13_69695597_70113452	0/0	t0007	1859	12	5	1	5	1	0	copy fasta	KLHL1	chr13	69695597	70113452
KLHL1_chr13_69695597_70113452	0/0	t0008	1859	8	4	3	0	0	1	copy fasta	KLHL1	chr13	69695597	70113452
KLHL1_chr13_69695597_70113452	0/0	t0009	1859	7	6	0	0	0	1	copy fasta	KLHL1	chr13	69695597	70113452
KLHL1_chr13_69695597_70113452	0/0	t0010	1859	4	3	1	0	0	0	copy fasta	KLHL1	chr13	69695597	70113452
KLHL1_chr13_69695597_70113452	0/0	t0011	1859	4	1	2	0	0	1	copy fasta	KLHL1	chr13	69695597	70113452
KLHL1_chr13_69695597_70113452	0/0	t0012	1859	3	3	0	0	0	0	copy fasta	KLHL1	chr13	69695597	70113452
KLHL1_chr13_69695597_70113452	0/0	t0013	1859	2	2	0	0	0	0	copy fasta	KLHL1	chr13	69695597	70113452
KLHL1_chr13_69695597_70113452	0/0	t0014	1859	1	0	0	1	0	0	copy fasta	KLHL1	chr13	69695597	70113452
KLHL1_chr13_69695597_70113452	0/0	t0015	1859	1	0	0	0	1	0	copy fasta	KLHL1	chr13	69695597	70113452
KLHL1_chr13_69695597_70113452	0/0	t0016	1859	1	1	0	0	0	0	copy fasta	KLHL1	chr13	69695597	70113452
KLHL1_chr13_69695597_70113452	0/0	t0017	1859	1	1	0	0	0	0	copy fasta	KLHL1	chr13	69695597	70113452
KLHL1_chr13_69695597_70113452	0/0	t0018	1859	1	1	0	0	0	0	copy fasta	KLHL1	chr13	69695597	70113452
KLHL1_chr13_69695597_70113452	0/0	t0019	1859	1	0	1	0	0	0	copy fasta	KLHL1	chr13	69695597	70113452
KLHL1_chr13_69695597_70113452	0/0	t0020	1859	1	0	0	1	0	0	copy fasta	KLHL1	chr13	69695597	70113452
KLHL1_chr13_69695597_70113452	0/0	t0021	1859	1	1	0	0	0	0	copy fasta	KLHL1	chr13	69695597	70113452
KLHL1_chr13_69695597_70113452	0/0	t0022	1859	1	1	0	0	0	0	copy fasta	KLHL1	chr13	69695597	70113452
KLHL1_chr13_69695597_70113452	0/0	t0023	1859	1	1	0	0	0	0	copy fasta	KLHL1	chr13	69695597	70113452
KLHL1_chr13_69695597_70113452	0/0	t0024	1859	1	1	0	0	0	0	copy fasta	KLHL1	chr13	69695597	70113452
KLHL1_chr13_69695597_70113452	0/0	t0025	1859	1	1	0	0	0	0	copy fasta	KLHL1	chr13	69695597	70113452