JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KLHL1_chr13_69695597_70113452	0/0	t0026	1859	1	0	1	0	0	0	copy fasta	KLHL1	chr13	69695597	70113452
KLHL1_chr13_69695597_70113452	0/0	t0027	1859	1	1	0	0	0	0	copy fasta	KLHL1	chr13	69695597	70113452
KLHL20_chr1_173709981_173791692	1/1	t0001	1585	253	33	36	134	12	36	copy fasta	KLHL20	chr1	173709981	173791692
KLHL20_chr1_173709981_173791692	0/0	t0002	1585	30	26	4	0	0	0	copy fasta	KLHL20	chr1	173709981	173791692
KLHL20_chr1_173709981_173791692	0/0	t0003	1588	9	9	0	0	0	0	copy fasta	KLHL20	chr1	173709981	173791692
KLHL20_chr1_173709981_173791692	0/0	t0004	1587	5	3	2	0	0	0	copy fasta	KLHL20	chr1	173709981	173791692
KLHL20_chr1_173709981_173791692	0/0	t0005	1584	3	0	0	3	0	0	copy fasta	KLHL20	chr1	173709981	173791692
KLHL20_chr1_173709981_173791692	0/0	t0006	1585	3	0	0	3	0	0	copy fasta	KLHL20	chr1	173709981	173791692
KLHL20_chr1_173709981_173791692	0/0	t0007	1585	2	2	0	0	0	0	copy fasta	KLHL20	chr1	173709981	173791692
KLHL20_chr1_173709981_173791692	0/0	t0008	1585	1	0	0	1	0	0	copy fasta	KLHL20	chr1	173709981	173791692
KLHL20_chr1_173709981_173791692	0/0	t0009	1585	1	1	0	0	0	0	copy fasta	KLHL20	chr1	173709981	173791692
KLHL20_chr1_173709981_173791692	0/0	t0010	1585	1	1	0	0	0	0	copy fasta	KLHL20	chr1	173709981	173791692
KLHL20_chr1_173709981_173791692	0/0	t0011	1585	1	1	0	0	0	0	copy fasta	KLHL20	chr1	173709981	173791692
KLHL20_chr1_173709981_173791692	0/0	t0012	1585	1	0	0	1	0	0	copy fasta	KLHL20	chr1	173709981	173791692
KLHL21_chr1_6585724_6607869	0/0	t0001	2694	98	3	22	57	5	11	copy fasta	KLHL21	chr1	6585724	6607869
KLHL21_chr1_6585724_6607869	0/0	t0002	2693	85	14	17	33	3	18	copy fasta	KLHL21	chr1	6585724	6607869
KLHL21_chr1_6585724_6607869	0/1	t0003	2694	82	0	10	66	0	5	copy fasta	KLHL21	chr1	6585724	6607869
KLHL21_chr1_6585724_6607869	1/0	t0004	2694	56	28	21	1	4	1	copy fasta	KLHL21	chr1	6585724	6607869
KLHL21_chr1_6585724_6607869	0/0	t0005	2694	15	14	1	0	0	0	copy fasta	KLHL21	chr1	6585724	6607869
KLHL21_chr1_6585724_6607869	0/0	t0006	2694	14	6	4	0	1	3	copy fasta	KLHL21	chr1	6585724	6607869
KLHL21_chr1_6585724_6607869	0/0	t0007	2693	8	0	2	6	0	0	copy fasta	KLHL21	chr1	6585724	6607869
KLHL21_chr1_6585724_6607869	0/0	t0008	2694	6	5	1	0	0	0	copy fasta	KLHL21	chr1	6585724	6607869
KLHL21_chr1_6585724_6607869	0/0	t0009	2693	6	6	0	0	0	0	copy fasta	KLHL21	chr1	6585724	6607869
KLHL21_chr1_6585724_6607869	0/0	t0010	2693	5	0	0	5	0	0	copy fasta	KLHL21	chr1	6585724	6607869
KLHL21_chr1_6585724_6607869	0/0	t0011	2693	4	4	0	0	0	0	copy fasta	KLHL21	chr1	6585724	6607869
KLHL21_chr1_6585724_6607869	0/0	t0012	2693	4	4	0	0	0	0	copy fasta	KLHL21	chr1	6585724	6607869
KLHL21_chr1_6585724_6607869	0/0	t0013	2694	4	4	0	0	0	0	copy fasta	KLHL21	chr1	6585724	6607869
KLHL21_chr1_6585724_6607869	0/0	t0014	2694	3	0	3	0	0	0	copy fasta	KLHL21	chr1	6585724	6607869
KLHL21_chr1_6585724_6607869	0/0	t0015	2694	3	0	0	3	0	0	copy fasta	KLHL21	chr1	6585724	6607869
KLHL21_chr1_6585724_6607869	0/0	t0016	2694	2	0	0	0	0	2	copy fasta	KLHL21	chr1	6585724	6607869
KLHL21_chr1_6585724_6607869	0/0	t0017	2694	2	0	0	2	0	0	copy fasta	KLHL21	chr1	6585724	6607869
KLHL21_chr1_6585724_6607869	0/0	t0018	2694	2	0	0	0	0	2	copy fasta	KLHL21	chr1	6585724	6607869
KLHL21_chr1_6585724_6607869	0/0	t0019	2693	2	0	0	2	0	0	copy fasta	KLHL21	chr1	6585724	6607869
KLHL21_chr1_6585724_6607869	0/0	t0020	2693	2	0	0	0	0	2	copy fasta	KLHL21	chr1	6585724	6607869
KLHL21_chr1_6585724_6607869	0/0	t0021	2693	1	0	1	0	0	0	copy fasta	KLHL21	chr1	6585724	6607869
KLHL21_chr1_6585724_6607869	0/0	t0022	2693	1	0	0	1	0	0	copy fasta	KLHL21	chr1	6585724	6607869
KLHL21_chr1_6585724_6607869	0/0	t0023	2694	1	0	0	1	0	0	copy fasta	KLHL21	chr1	6585724	6607869
KLHL21_chr1_6585724_6607869	0/0	t0024	2694	1	1	0	0	0	0	copy fasta	KLHL21	chr1	6585724	6607869
KLHL21_chr1_6585724_6607869	0/0	t0025	2694	1	0	1	0	0	0	copy fasta	KLHL21	chr1	6585724	6607869
KLHL21_chr1_6585724_6607869	0/0	t0026	2694	1	1	0	0	0	0	copy fasta	KLHL21	chr1	6585724	6607869
KLHL21_chr1_6585724_6607869	0/0	t0027	2694	1	1	0	0	0	0	copy fasta	KLHL21	chr1	6585724	6607869
KLHL21_chr1_6585724_6607869	0/0	t0028	2694	1	0	0	1	0	0	copy fasta	KLHL21	chr1	6585724	6607869
KLHL21_chr1_6585724_6607869	0/0	t0029	2694	1	1	0	0	0	0	copy fasta	KLHL21	chr1	6585724	6607869
KLHL21_chr1_6585724_6607869	0/0	t0030	2693	1	1	0	0	0	0	copy fasta	KLHL21	chr1	6585724	6607869
KLHL21_chr1_6585724_6607869	0/0	t0031	2693	1	0	0	1	0	0	copy fasta	KLHL21	chr1	6585724	6607869
KLHL21_chr1_6585724_6607869	0/0	t0032	2693	1	0	0	1	0	0	copy fasta	KLHL21	chr1	6585724	6607869
KLHL21_chr1_6585724_6607869	0/0	t0033	2693	1	1	0	0	0	0	copy fasta	KLHL21	chr1	6585724	6607869
KLHL21_chr1_6585724_6607869	0/0	t0034	2694	1	1	0	0	0	0	copy fasta	KLHL21	chr1	6585724	6607869
KLHL21_chr1_6585724_6607869	0/0	t0035	2694	1	1	0	0	0	0	copy fasta	KLHL21	chr1	6585724	6607869
KLHL21_chr1_6585724_6607869	0/0	t0036	2694	1	0	0	1	0	0	copy fasta	KLHL21	chr1	6585724	6607869