Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AP1S3_chr2_223750326_223842582	0/0	t0060	3535	1	1	0	0	0	0	copy fasta	AP1S3	chr2	223750326	223842582
AP1S3_chr2_223750326_223842582	0/0	t0061	3522	1	0	0	0	0	1	copy fasta	AP1S3	chr2	223750326	223842582
AP1S3_chr2_223750326_223842582	0/0	t0062	3504	1	0	1	0	0	0	copy fasta	AP1S3	chr2	223750326	223842582
AP1S3_chr2_223750326_223842582	0/0	t0063	3524	1	0	1	0	0	0	copy fasta	AP1S3	chr2	223750326	223842582
AP1S3_chr2_223750326_223842582	1/0	t0064	3522	1	0	0	0	0	0	copy fasta	AP1S3	chr2	223750326	223842582
AP1S3_chr2_223750326_223842582	0/0	t0065	3523	1	0	1	0	0	0	copy fasta	AP1S3	chr2	223750326	223842582
AP1S3_chr2_223750326_223842582	0/0	t0066	3525	1	0	0	1	0	0	copy fasta	AP1S3	chr2	223750326	223842582
AP1S3_chr2_223750326_223842582	0/0	t0067	3522	1	0	0	1	0	0	copy fasta	AP1S3	chr2	223750326	223842582
AP1S3_chr2_223750326_223842582	0/0	t0068	3523	1	1	0	0	0	0	copy fasta	AP1S3	chr2	223750326	223842582
AP1S3_chr2_223750326_223842582	0/0	t0069	3535	1	0	0	1	0	0	copy fasta	AP1S3	chr2	223750326	223842582
AP1S3_chr2_223750326_223842582	0/0	t0070	3523	1	1	0	0	0	0	copy fasta	AP1S3	chr2	223750326	223842582
AP1S3_chr2_223750326_223842582	0/0	t0071	3536	1	0	0	1	0	0	copy fasta	AP1S3	chr2	223750326	223842582
AP1S3_chr2_223750326_223842582	0/0	t0072	3536	1	0	0	1	0	0	copy fasta	AP1S3	chr2	223750326	223842582
AP2A1_chr19_49762001_49812114	1/1	t0001	490	277	64	55	108	12	36	copy fasta	AP2A1	chr19	49762001	49812114
AP2A1_chr19_49762001_49812114	0/0	t0002	494	45	8	7	18	2	10	copy fasta	AP2A1	chr19	49762001	49812114
AP2A1_chr19_49762001_49812114	0/0	t0003	490	13	3	2	8	0	0	copy fasta	AP2A1	chr19	49762001	49812114
AP2A1_chr19_49762001_49812114	0/0	t0004	490	5	5	0	0	0	0	copy fasta	AP2A1	chr19	49762001	49812114
AP2A1_chr19_49762001_49812114	0/0	t0005	490	2	2	0	0	0	0	copy fasta	AP2A1	chr19	49762001	49812114
AP2A2_chr11_920870_1017240	0/0	t0001	1768	100	19	21	44	7	9	copy fasta	AP2A2	chr11	920870	1017240
AP2A2_chr11_920870_1017240	1/1	t0002	1768	74	23	12	29	1	7	copy fasta	AP2A2	chr11	920870	1017240
AP2A2_chr11_920870_1017240	0/0	t0003	1768	38	0	4	21	0	13	copy fasta	AP2A2	chr11	920870	1017240
AP2A2_chr11_920870_1017240	0/0	t0004	1768	16	12	4	0	0	0	copy fasta	AP2A2	chr11	920870	1017240
AP2A2_chr11_920870_1017240	0/0	t0005	1768	12	5	6	0	0	1	copy fasta	AP2A2	chr11	920870	1017240
AP2A2_chr11_920870_1017240	0/0	t0006	1768	8	8	0	0	0	0	copy fasta	AP2A2	chr11	920870	1017240
AP2A2_chr11_920870_1017240	0/0	t0007	1768	6	0	2	0	3	1	copy fasta	AP2A2	chr11	920870	1017240
AP2A2_chr11_920870_1017240	0/0	t0008	1768	2	0	0	2	0	0	copy fasta	AP2A2	chr11	920870	1017240
AP2A2_chr11_920870_1017240	0/0	t0009	1768	2	1	1	0	0	0	copy fasta	AP2A2	chr11	920870	1017240
AP2A2_chr11_920870_1017240	0/0	t0010	1768	1	1	0	0	0	0	copy fasta	AP2A2	chr11	920870	1017240
AP2A2_chr11_920870_1017240	0/0	t0011	1768	1	0	0	1	0	0	copy fasta	AP2A2	chr11	920870	1017240
AP2A2_chr11_920870_1017240	0/0	t0012	1768	1	0	0	0	1	0	copy fasta	AP2A2	chr11	920870	1017240
AP2A2_chr11_920870_1017240	0/0	t0013	1768	1	0	0	1	0	0	copy fasta	AP2A2	chr11	920870	1017240
AP2A2_chr11_920870_1017240	0/0	t0014	1768	1	0	0	0	0	1	copy fasta	AP2A2	chr11	920870	1017240
AP2A2_chr11_920870_1017240	0/0	t0015	1768	1	0	0	1	0	0	copy fasta	AP2A2	chr11	920870	1017240
AP2A2_chr11_920870_1017240	0/0	t0016	1768	1	0	1	0	0	0	copy fasta	AP2A2	chr11	920870	1017240
AP2A2_chr11_920870_1017240	0/0	t0017	1768	1	0	0	1	0	0	copy fasta	AP2A2	chr11	920870	1017240
AP2A2_chr11_920870_1017240	0/0	t0018	1768	1	1	0	0	0	0	copy fasta	AP2A2	chr11	920870	1017240
AP2A2_chr11_920870_1017240	0/0	t0019	1768	1	0	1	0	0	0	copy fasta	AP2A2	chr11	920870	1017240
AP2B1_chr17_35582322_35731413	1/0	t0001	2845	135	38	23	62	2	9	copy fasta	AP2B1	chr17	35582322	35731413
AP2B1_chr17_35582322_35731413	0/0	t0002	2845	84	24	13	35	4	8	copy fasta	AP2B1	chr17	35582322	35731413
AP2B1_chr17_35582322_35731413	0/0	t0003	2845	45	1	2	37	1	4	copy fasta	AP2B1	chr17	35582322	35731413
AP2B1_chr17_35582322_35731413	0/0	t0004	2845	37	3	5	26	1	2	copy fasta	AP2B1	chr17	35582322	35731413
AP2B1_chr17_35582322_35731413	0/1	t0005	2845	26	0	8	4	4	9	copy fasta	AP2B1	chr17	35582322	35731413
AP2B1_chr17_35582322_35731413	0/0	t0006	2845	13	2	10	0	0	1	copy fasta	AP2B1	chr17	35582322	35731413
AP2B1_chr17_35582322_35731413	0/0	t0007	2845	7	4	3	0	0	0	copy fasta	AP2B1	chr17	35582322	35731413
AP2B1_chr17_35582322_35731413	0/0	t0008	2845	6	6	0	0	0	0	copy fasta	AP2B1	chr17	35582322	35731413
AP2B1_chr17_35582322_35731413	0/0	t0009	2845	4	4	0	0	0	0	copy fasta	AP2B1	chr17	35582322	35731413
AP2B1_chr17_35582322_35731413	0/0	t0010	2845	3	3	0	0	0	0	copy fasta	AP2B1	chr17	35582322	35731413
AP2B1_chr17_35582322_35731413	0/0	t0011	2845	2	0	0	2	0	0	copy fasta	AP2B1	chr17	35582322	35731413
AP2B1_chr17_35582322_35731413	0/0	t0012	2845	1	0	0	0	0	1	copy fasta	AP2B1	chr17	35582322	35731413
AP2B1_chr17_35582322_35731413	0/0	t0013	2845	1	0	0	1	0	0	copy fasta	AP2B1	chr17	35582322	35731413