JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KLHL21_chr1_6585724_6607869	0/0	t0037	2694	1	0	1	0	0	0	copy fasta	KLHL21	chr1	6585724	6607869
KLHL21_chr1_6585724_6607869	0/0	t0038	2694	1	0	0	1	0	0	copy fasta	KLHL21	chr1	6585724	6607869
KLHL21_chr1_6585724_6607869	0/0	t0039	2694	1	0	0	0	1	0	copy fasta	KLHL21	chr1	6585724	6607869
KLHL22_chr22_20436519_20500795	1/0	t0001	624	192	32	36	87	10	26	copy fasta	KLHL22	chr22	20436519	20500795
KLHL22_chr22_20436519_20500795	0/1	t0002	624	114	48	8	49	2	6	copy fasta	KLHL22	chr22	20436519	20500795
KLHL22_chr22_20436519_20500795	0/0	t0003	624	18	2	12	0	2	2	copy fasta	KLHL22	chr22	20436519	20500795
KLHL22_chr22_20436519_20500795	0/0	t0004	624	11	0	0	11	0	0	copy fasta	KLHL22	chr22	20436519	20500795
KLHL22_chr22_20436519_20500795	0/0	t0005	624	2	2	0	0	0	0	copy fasta	KLHL22	chr22	20436519	20500795
KLHL22_chr22_20436519_20500795	0/0	t0006	624	1	0	0	1	0	0	copy fasta	KLHL22	chr22	20436519	20500795
KLHL22_chr22_20436519_20500795	0/0	t0007	624	1	1	0	0	0	0	copy fasta	KLHL22	chr22	20436519	20500795
KLHL22_chr22_20436519_20500795	0/0	t0008	624	1	1	0	0	0	0	copy fasta	KLHL22	chr22	20436519	20500795
KLHL23_chr2_169728832_169756878	0/0	t0001	2722	58	5	10	31	3	9	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0002	2690	24	0	3	14	2	5	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/1	t0003	2660	18	0	12	0	3	2	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0004	2368	13	1	3	7	1	1	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0005	2471	12	10	2	0	0	0	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0006	2504	12	0	0	12	0	0	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	1/0	t0007	2405	11	5	1	0	1	3	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0008	2672	10	0	0	9	0	1	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0009	2688	8	8	0	0	0	0	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0010	2690	8	0	0	8	0	0	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0011	2690	7	0	1	6	0	0	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0012	2722	7	1	0	5	0	1	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0013	2724	6	0	0	6	0	0	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0014	2426	6	6	0	0	0	0	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0015	2658	5	0	1	2	0	2	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0016	2658	5	0	0	5	0	0	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0017	2604	5	0	0	1	0	4	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0018	2369	4	0	2	1	0	1	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0019	2722	4	0	0	3	0	1	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0020	2754	4	0	2	2	0	0	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0021	2658	4	2	1	0	1	0	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0022	2406	4	4	0	0	0	0	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0023	2504	4	0	0	4	0	0	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0024	2598	4	4	0	0	0	0	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0025	2658	4	4	0	0	0	0	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0026	2589	3	3	0	0	0	0	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0027	2722	3	0	0	3	0	0	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0028	2722	3	0	2	1	0	0	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0029	2534	3	3	0	0	0	0	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0030	2711	3	3	0	0	0	0	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0031	2620	3	0	0	3	0	0	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0032	2475	3	3	0	0	0	0	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0033	2365	2	0	2	0	0	0	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0034	2370	2	0	2	0	0	0	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0035	2626	2	0	0	0	0	2	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0036	2691	2	0	0	2	0	0	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0037	2690	2	0	0	2	0	0	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0038	2692	2	0	0	0	2	0	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0039	2661	2	0	2	0	0	0	copy fasta	KLHL23	chr2	169728832	169756878