JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
KLHL23_chr2_169728832_169756878	0/0	t0040	2720	2	2	0	0	0	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0041	2754	2	0	2	0	0	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0042	2658	2	2	0	0	0	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0043	2754	2	0	1	1	0	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0044	2690	2	0	0	0	2	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0045	2672	2	2	0	0	0	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0046	2505	2	0	0	1	1	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0047	2574	2	2	0	0	0	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0048	2424	2	2	0	0	0	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0049	2640	2	0	0	2	0	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0050	2642	2	0	0	2	0	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0051	2646	2	0	1	1	0	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0052	2688	1	1	0	0	0	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0053	2720	1	1	0	0	0	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0054	2368	1	0	0	1	0	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0055	2364	1	0	1	0	0	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0056	2363	1	0	1	0	0	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0057	2368	1	0	0	1	0	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0058	2660	1	0	1	0	0	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0059	2693	1	0	1	0	0	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0060	2692	1	0	1	0	0	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0061	2690	1	0	0	0	1	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0062	2628	1	0	0	1	0	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0063	2629	1	0	0	1	0	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0064	2721	1	0	1	0	0	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0065	2686	1	0	1	0	0	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0066	2722	1	0	0	1	0	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0067	2656	1	0	0	1	0	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0068	2688	1	0	0	1	0	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0069	2691	1	0	0	1	0	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0070	2690	1	0	0	0	1	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0071	2689	1	0	1	0	0	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0072	2659	1	0	0	1	0	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0073	2657	1	0	0	1	0	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0074	2690	1	0	0	1	0	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0075	2850	1	0	1	0	0	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0076	2658	1	0	0	1	0	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0077	2688	1	0	0	1	0	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0078	2658	1	0	1	0	0	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0079	2660	1	0	1	0	0	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0080	2688	1	0	0	1	0	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0081	2690	1	0	0	1	0	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0082	2472	1	1	0	0	0	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0083	2718	1	0	0	1	0	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0084	2753	1	0	1	0	0	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0085	2786	1	0	0	1	0	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0086	2688	1	0	1	0	0	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0087	2722	1	1	0	0	0	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0088	2656	1	1	0	0	0	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0089	2688	1	0	0	1	0	copy fasta	KLHL23	chr2	169728832	169756878