JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KLHL23_chr2_169728832_169756878	0/0	t0090	2656	1	0	0	1	0	0	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0091	2722	1	0	0	1	0	0	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0092	2754	1	0	0	1	0	0	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0093	2720	1	0	0	1	0	0	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0094	2722	1	0	0	1	0	0	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0095	2755	1	0	1	0	0	0	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0096	2786	1	0	0	1	0	0	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0097	2722	1	0	0	1	0	0	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0098	2724	1	0	0	0	0	1	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0099	2688	1	0	0	1	0	0	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0100	2724	1	0	0	1	0	0	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0101	2688	1	0	1	0	0	0	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0102	2720	1	0	0	0	0	1	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0103	2690	1	1	0	0	0	0	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0104	2690	1	0	0	1	0	0	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0105	2724	1	0	0	1	0	0	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0106	2536	1	1	0	0	0	0	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0107	2626	1	1	0	0	0	0	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0108	2640	1	1	0	0	0	0	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0109	2672	1	1	0	0	0	0	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0110	2672	1	0	0	1	0	0	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0111	2608	1	0	0	1	0	0	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0112	2672	1	0	0	1	0	0	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0113	2698	1	0	0	1	0	0	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0114	2505	1	0	0	0	1	0	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0115	2504	1	0	0	0	0	1	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0116	2726	1	1	0	0	0	0	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0117	2694	1	1	0	0	0	0	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0118	2725	1	1	0	0	0	0	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0119	2694	1	1	0	0	0	0	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0120	2606	1	0	0	0	1	0	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0121	2640	1	1	0	0	0	0	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0122	2640	1	1	0	0	0	0	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0123	2642	1	1	0	0	0	0	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0124	2667	1	0	1	0	0	0	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0125	2666	1	0	0	0	1	0	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0126	2668	1	0	1	0	0	0	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0127	2640	1	1	0	0	0	0	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0128	2642	1	0	0	1	0	0	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0129	2644	1	0	0	1	0	0	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0130	2668	1	0	0	0	0	1	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0131	2640	1	0	0	0	1	0	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0132	2644	1	1	0	0	0	0	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0133	2428	1	1	0	0	0	0	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0134	2644	1	0	0	0	0	1	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0135	2645	1	0	0	1	0	0	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0136	2432	1	1	0	0	0	0	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0137	2646	1	0	0	0	1	0	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0138	2650	1	0	0	1	0	0	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0139	2648	1	0	1	0	0	0	copy fasta	KLHL23	chr2	169728832	169756878