JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KLHL23_chr2_169728832_169756878	0/0	t0140	2654	1	1	0	0	0	0	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0141	2650	1	0	1	0	0	0	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0142	2656	1	0	1	0	0	0	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0143	2690	1	0	0	1	0	0	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0144	2696	1	1	0	0	0	0	copy fasta	KLHL23	chr2	169728832	169756878
KLHL23_chr2_169728832_169756878	0/0	t0145	2694	1	1	0	0	0	0	copy fasta	KLHL23	chr2	169728832	169756878
KLHL24_chr3_183630623_183689519	1/0	t0001	5529	86	17	14	30	9	15	copy fasta	KLHL24	chr3	183630623	183689519
KLHL24_chr3_183630623_183689519	0/0	t0002	5533	72	21	12	35	1	3	copy fasta	KLHL24	chr3	183630623	183689519
KLHL24_chr3_183630623_183689519	0/0	t0003	5532	30	5	0	22	0	3	copy fasta	KLHL24	chr3	183630623	183689519
KLHL24_chr3_183630623_183689519	0/0	t0004	5530	18	4	2	9	0	3	copy fasta	KLHL24	chr3	183630623	183689519
KLHL24_chr3_183630623_183689519	0/0	t0005	5534	11	3	2	4	0	2	copy fasta	KLHL24	chr3	183630623	183689519
KLHL24_chr3_183630623_183689519	0/0	t0006	5530	11	2	1	6	1	1	copy fasta	KLHL24	chr3	183630623	183689519
KLHL24_chr3_183630623_183689519	0/0	t0007	5530	11	9	2	0	0	0	copy fasta	KLHL24	chr3	183630623	183689519
KLHL24_chr3_183630623_183689519	0/0	t0008	5534	8	1	3	0	3	1	copy fasta	KLHL24	chr3	183630623	183689519
KLHL24_chr3_183630623_183689519	0/0	t0009	5530	8	7	1	0	0	0	copy fasta	KLHL24	chr3	183630623	183689519
KLHL24_chr3_183630623_183689519	0/0	t0010	5504	6	5	1	0	0	0	copy fasta	KLHL24	chr3	183630623	183689519
KLHL24_chr3_183630623_183689519	0/0	t0011	5529	4	0	0	4	0	0	copy fasta	KLHL24	chr3	183630623	183689519
KLHL24_chr3_183630623_183689519	0/0	t0012	5530	4	0	4	0	0	0	copy fasta	KLHL24	chr3	183630623	183689519
KLHL24_chr3_183630623_183689519	0/0	t0013	5529	3	0	0	1	0	2	copy fasta	KLHL24	chr3	183630623	183689519
KLHL24_chr3_183630623_183689519	0/0	t0014	5529	3	0	0	3	0	0	copy fasta	KLHL24	chr3	183630623	183689519
KLHL24_chr3_183630623_183689519	0/0	t0015	5533	3	1	0	2	0	0	copy fasta	KLHL24	chr3	183630623	183689519
KLHL24_chr3_183630623_183689519	0/0	t0016	5532	2	0	0	2	0	0	copy fasta	KLHL24	chr3	183630623	183689519
KLHL24_chr3_183630623_183689519	0/0	t0017	5529	2	1	1	0	0	0	copy fasta	KLHL24	chr3	183630623	183689519
KLHL24_chr3_183630623_183689519	0/0	t0018	5529	2	0	0	2	0	0	copy fasta	KLHL24	chr3	183630623	183689519
KLHL24_chr3_183630623_183689519	0/0	t0019	5532	2	2	0	0	0	0	copy fasta	KLHL24	chr3	183630623	183689519
KLHL24_chr3_183630623_183689519	0/0	t0020	5532	2	2	0	0	0	0	copy fasta	KLHL24	chr3	183630623	183689519
KLHL24_chr3_183630623_183689519	0/0	t0021	5529	2	2	0	0	0	0	copy fasta	KLHL24	chr3	183630623	183689519
KLHL24_chr3_183630623_183689519	0/0	t0022	5533	1	0	1	0	0	0	copy fasta	KLHL24	chr3	183630623	183689519
KLHL24_chr3_183630623_183689519	0/0	t0023	5533	1	0	0	1	0	0	copy fasta	KLHL24	chr3	183630623	183689519
KLHL24_chr3_183630623_183689519	0/0	t0024	5533	1	0	1	0	0	0	copy fasta	KLHL24	chr3	183630623	183689519
KLHL24_chr3_183630623_183689519	0/0	t0025	5534	1	0	1	0	0	0	copy fasta	KLHL24	chr3	183630623	183689519
KLHL24_chr3_183630623_183689519	0/0	t0026	5533	1	0	1	0	0	0	copy fasta	KLHL24	chr3	183630623	183689519
KLHL24_chr3_183630623_183689519	0/0	t0027	5533	1	0	0	1	0	0	copy fasta	KLHL24	chr3	183630623	183689519
KLHL24_chr3_183630623_183689519	0/0	t0028	5530	1	0	0	1	0	0	copy fasta	KLHL24	chr3	183630623	183689519
KLHL24_chr3_183630623_183689519	0/0	t0029	5531	1	0	0	0	0	1	copy fasta	KLHL24	chr3	183630623	183689519
KLHL24_chr3_183630623_183689519	0/0	t0030	5529	1	0	0	1	0	0	copy fasta	KLHL24	chr3	183630623	183689519
KLHL24_chr3_183630623_183689519	0/0	t0031	5529	1	0	1	0	0	0	copy fasta	KLHL24	chr3	183630623	183689519
KLHL24_chr3_183630623_183689519	0/0	t0032	5530	1	1	0	0	0	0	copy fasta	KLHL24	chr3	183630623	183689519
KLHL24_chr3_183630623_183689519	0/0	t0033	5530	1	0	0	0	0	1	copy fasta	KLHL24	chr3	183630623	183689519
KLHL24_chr3_183630623_183689519	0/0	t0034	5529	1	0	0	1	0	0	copy fasta	KLHL24	chr3	183630623	183689519
KLHL24_chr3_183630623_183689519	0/0	t0035	5530	1	1	0	0	0	0	copy fasta	KLHL24	chr3	183630623	183689519
KLHL24_chr3_183630623_183689519	0/0	t0036	5532	1	0	0	1	0	0	copy fasta	KLHL24	chr3	183630623	183689519
KLHL24_chr3_183630623_183689519	0/0	t0037	5532	1	1	0	0	0	0	copy fasta	KLHL24	chr3	183630623	183689519
KLHL24_chr3_183630623_183689519	0/0	t0038	5533	1	1	0	0	0	0	copy fasta	KLHL24	chr3	183630623	183689519
KLHL24_chr3_183630623_183689519	0/0	t0039	5530	1	1	0	0	0	0	copy fasta	KLHL24	chr3	183630623	183689519
KLHL24_chr3_183630623_183689519	0/0	t0040	5530	1	1	0	0	0	0	copy fasta	KLHL24	chr3	183630623	183689519
KLHL24_chr3_183630623_183689519	0/0	t0041	5530	1	1	0	0	0	0	copy fasta	KLHL24	chr3	183630623	183689519
KLHL24_chr3_183630623_183689519	0/0	t0042	5530	1	1	0	0	0	0	copy fasta	KLHL24	chr3	183630623	183689519
KLHL24_chr3_183630623_183689519	0/1	t0043	5529	1	0	0	0	0	0	copy fasta	KLHL24	chr3	183630623	183689519
KLHL25_chr15_85754326_85799925	0/1	t0001	1881	93	17	16	47	1	11	copy fasta	KLHL25	chr15	85754326	85799925