JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KLHL25_chr15_85754326_85799925	0/0	t0002	1881	76	1	3	55	3	14	copy fasta	KLHL25	chr15	85754326	85799925
KLHL25_chr15_85754326_85799925	0/0	t0003	1881	65	7	17	38	0	3	copy fasta	KLHL25	chr15	85754326	85799925
KLHL25_chr15_85754326_85799925	0/0	t0004	1881	42	10	7	23	2	0	copy fasta	KLHL25	chr15	85754326	85799925
KLHL25_chr15_85754326_85799925	0/0	t0005	1881	26	1	14	3	4	4	copy fasta	KLHL25	chr15	85754326	85799925
KLHL25_chr15_85754326_85799925	0/0	t0006	1881	20	9	5	0	1	5	copy fasta	KLHL25	chr15	85754326	85799925
KLHL25_chr15_85754326_85799925	1/0	t0007	1881	18	9	4	1	0	3	copy fasta	KLHL25	chr15	85754326	85799925
KLHL25_chr15_85754326_85799925	0/0	t0008	1881	13	13	0	0	0	0	copy fasta	KLHL25	chr15	85754326	85799925
KLHL25_chr15_85754326_85799925	0/0	t0009	1881	7	0	4	0	1	2	copy fasta	KLHL25	chr15	85754326	85799925
KLHL25_chr15_85754326_85799925	0/0	t0010	1881	6	6	0	0	0	0	copy fasta	KLHL25	chr15	85754326	85799925
KLHL25_chr15_85754326_85799925	0/0	t0011	1881	6	6	0	0	0	0	copy fasta	KLHL25	chr15	85754326	85799925
KLHL25_chr15_85754326_85799925	0/0	t0012	1881	4	4	0	0	0	0	copy fasta	KLHL25	chr15	85754326	85799925
KLHL25_chr15_85754326_85799925	0/0	t0013	1881	3	0	0	0	3	0	copy fasta	KLHL25	chr15	85754326	85799925
KLHL25_chr15_85754326_85799925	0/0	t0014	1881	3	0	3	0	0	0	copy fasta	KLHL25	chr15	85754326	85799925
KLHL25_chr15_85754326_85799925	0/0	t0015	1881	2	0	2	0	0	0	copy fasta	KLHL25	chr15	85754326	85799925
KLHL25_chr15_85754326_85799925	0/0	t0016	1881	2	2	0	0	0	0	copy fasta	KLHL25	chr15	85754326	85799925
KLHL25_chr15_85754326_85799925	0/0	t0017	1881	2	0	1	1	0	0	copy fasta	KLHL25	chr15	85754326	85799925
KLHL25_chr15_85754326_85799925	0/0	t0018	1881	2	0	0	2	0	0	copy fasta	KLHL25	chr15	85754326	85799925
KLHL25_chr15_85754326_85799925	0/0	t0019	1881	2	2	0	0	0	0	copy fasta	KLHL25	chr15	85754326	85799925
KLHL25_chr15_85754326_85799925	0/0	t0020	1881	2	2	0	0	0	0	copy fasta	KLHL25	chr15	85754326	85799925
KLHL25_chr15_85754326_85799925	0/0	t0021	1881	1	1	0	0	0	0	copy fasta	KLHL25	chr15	85754326	85799925
KLHL25_chr15_85754326_85799925	0/0	t0022	1881	1	0	0	1	0	0	copy fasta	KLHL25	chr15	85754326	85799925
KLHL25_chr15_85754326_85799925	0/0	t0023	1881	1	0	1	0	0	0	copy fasta	KLHL25	chr15	85754326	85799925
KLHL25_chr15_85754326_85799925	0/0	t0024	1881	1	0	0	1	0	0	copy fasta	KLHL25	chr15	85754326	85799925
KLHL25_chr15_85754326_85799925	0/0	t0025	1881	1	0	0	1	0	0	copy fasta	KLHL25	chr15	85754326	85799925
KLHL25_chr15_85754326_85799925	0/0	t0026	1881	1	0	0	1	0	0	copy fasta	KLHL25	chr15	85754326	85799925
KLHL25_chr15_85754326_85799925	0/0	t0027	1881	1	0	0	0	1	0	copy fasta	KLHL25	chr15	85754326	85799925
KLHL25_chr15_85754326_85799925	0/0	t0028	1881	1	1	0	0	0	0	copy fasta	KLHL25	chr15	85754326	85799925
KLHL25_chr15_85754326_85799925	0/0	t0029	1881	1	1	0	0	0	0	copy fasta	KLHL25	chr15	85754326	85799925
KLHL25_chr15_85754326_85799925	0/0	t0030	1881	1	0	1	0	0	0	copy fasta	KLHL25	chr15	85754326	85799925
KLHL25_chr15_85754326_85799925	0/0	t0031	1881	1	1	0	0	0	0	copy fasta	KLHL25	chr15	85754326	85799925
KLHL25_chr15_85754326_85799925	0/0	t0032	1781	1	1	0	0	0	0	copy fasta	KLHL25	chr15	85754326	85799925
KLHL26_chr19_18632028_18676721	0/0	t0001	2504	107	35	20	43	2	7	copy fasta	KLHL26	chr19	18632028	18676721
KLHL26_chr19_18632028_18676721	1/0	t0002	2504	76	3	22	35	4	11	copy fasta	KLHL26	chr19	18632028	18676721
KLHL26_chr19_18632028_18676721	0/0	t0003	2504	21	8	5	6	1	1	copy fasta	KLHL26	chr19	18632028	18676721
KLHL26_chr19_18632028_18676721	0/0	t0004	2504	17	0	9	0	2	6	copy fasta	KLHL26	chr19	18632028	18676721
KLHL26_chr19_18632028_18676721	0/1	t0005	2503	13	1	4	4	1	2	copy fasta	KLHL26	chr19	18632028	18676721
KLHL26_chr19_18632028_18676721	0/0	t0006	2504	11	1	0	9	0	1	copy fasta	KLHL26	chr19	18632028	18676721
KLHL26_chr19_18632028_18676721	0/0	t0007	2503	9	7	2	0	0	0	copy fasta	KLHL26	chr19	18632028	18676721
KLHL26_chr19_18632028_18676721	0/0	t0008	2504	8	0	0	8	0	0	copy fasta	KLHL26	chr19	18632028	18676721
KLHL26_chr19_18632028_18676721	0/0	t0009	2504	7	7	0	0	0	0	copy fasta	KLHL26	chr19	18632028	18676721
KLHL26_chr19_18632028_18676721	0/0	t0010	2503	7	0	0	7	0	0	copy fasta	KLHL26	chr19	18632028	18676721
KLHL26_chr19_18632028_18676721	0/0	t0011	2504	6	0	0	6	0	0	copy fasta	KLHL26	chr19	18632028	18676721
KLHL26_chr19_18632028_18676721	0/0	t0012	2504	6	3	3	0	0	0	copy fasta	KLHL26	chr19	18632028	18676721
KLHL26_chr19_18632028_18676721	0/0	t0013	2503	5	4	1	0	0	0	copy fasta	KLHL26	chr19	18632028	18676721
KLHL26_chr19_18632028_18676721	0/0	t0014	2501	4	4	0	0	0	0	copy fasta	KLHL26	chr19	18632028	18676721
KLHL26_chr19_18632028_18676721	0/0	t0015	2504	4	0	0	2	2	0	copy fasta	KLHL26	chr19	18632028	18676721
KLHL26_chr19_18632028_18676721	0/0	t0016	2504	4	1	2	0	0	1	copy fasta	KLHL26	chr19	18632028	18676721
KLHL26_chr19_18632028_18676721	0/0	t0017	2504	3	3	0	0	0	0	copy fasta	KLHL26	chr19	18632028	18676721
KLHL26_chr19_18632028_18676721	0/0	t0018	2504	3	3	0	0	0	0	copy fasta	KLHL26	chr19	18632028	18676721
KLHL26_chr19_18632028_18676721	0/0	t0019	2504	2	0	0	2	0	0	copy fasta	KLHL26	chr19	18632028	18676721