JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KLHL26_chr19_18632028_18676721	0/0	t0020	2504	2	0	0	0	0	2	copy fasta	KLHL26	chr19	18632028	18676721
KLHL26_chr19_18632028_18676721	0/0	t0021	2504	2	1	0	0	1	0	copy fasta	KLHL26	chr19	18632028	18676721
KLHL26_chr19_18632028_18676721	0/0	t0022	2504	2	0	1	1	0	0	copy fasta	KLHL26	chr19	18632028	18676721
KLHL26_chr19_18632028_18676721	0/0	t0023	2504	2	0	0	0	0	2	copy fasta	KLHL26	chr19	18632028	18676721
KLHL26_chr19_18632028_18676721	0/0	t0024	2504	2	1	1	0	0	0	copy fasta	KLHL26	chr19	18632028	18676721
KLHL26_chr19_18632028_18676721	0/0	t0025	2504	2	1	0	0	1	0	copy fasta	KLHL26	chr19	18632028	18676721
KLHL26_chr19_18632028_18676721	0/0	t0026	2504	1	0	0	0	0	1	copy fasta	KLHL26	chr19	18632028	18676721
KLHL26_chr19_18632028_18676721	0/0	t0027	2504	1	1	0	0	0	0	copy fasta	KLHL26	chr19	18632028	18676721
KLHL26_chr19_18632028_18676721	0/0	t0028	2504	1	1	0	0	0	0	copy fasta	KLHL26	chr19	18632028	18676721
KLHL26_chr19_18632028_18676721	0/0	t0029	2504	1	1	0	0	0	0	copy fasta	KLHL26	chr19	18632028	18676721
KLHL26_chr19_18632028_18676721	0/0	t0030	2504	1	0	0	1	0	0	copy fasta	KLHL26	chr19	18632028	18676721
KLHL26_chr19_18632028_18676721	0/0	t0031	2504	1	1	0	0	0	0	copy fasta	KLHL26	chr19	18632028	18676721
KLHL26_chr19_18632028_18676721	0/0	t0032	2503	1	0	1	0	0	0	copy fasta	KLHL26	chr19	18632028	18676721
KLHL26_chr19_18632028_18676721	0/0	t0033	2504	1	0	1	0	0	0	copy fasta	KLHL26	chr19	18632028	18676721
KLHL26_chr19_18632028_18676721	0/0	t0034	2504	1	1	0	0	0	0	copy fasta	KLHL26	chr19	18632028	18676721
KLHL26_chr19_18632028_18676721	0/0	t0035	2503	1	0	1	0	0	0	copy fasta	KLHL26	chr19	18632028	18676721
KLHL26_chr19_18632028_18676721	0/0	t0036	2504	1	0	1	0	0	0	copy fasta	KLHL26	chr19	18632028	18676721
KLHL26_chr19_18632028_18676721	0/0	t0037	2504	1	1	0	0	0	0	copy fasta	KLHL26	chr19	18632028	18676721
KLHL26_chr19_18632028_18676721	0/0	t0038	2503	1	1	0	0	0	0	copy fasta	KLHL26	chr19	18632028	18676721
KLHL28_chr14_44919324_44966947	1/0	t0001	4807	74	14	18	35	4	2	copy fasta	KLHL28	chr14	44919324	44966947
KLHL28_chr14_44919324_44966947	0/0	t0002	4807	36	10	2	19	3	2	copy fasta	KLHL28	chr14	44919324	44966947
KLHL28_chr14_44919324_44966947	0/0	t0003	4807	17	0	3	13	1	0	copy fasta	KLHL28	chr14	44919324	44966947
KLHL28_chr14_44919324_44966947	0/0	t0004	4807	15	14	1	0	0	0	copy fasta	KLHL28	chr14	44919324	44966947
KLHL28_chr14_44919324_44966947	0/0	t0005	4807	14	13	1	0	0	0	copy fasta	KLHL28	chr14	44919324	44966947
KLHL28_chr14_44919324_44966947	0/0	t0006	4807	11	10	1	0	0	0	copy fasta	KLHL28	chr14	44919324	44966947
KLHL28_chr14_44919324_44966947	0/0	t0007	4806	5	0	1	3	0	1	copy fasta	KLHL28	chr14	44919324	44966947
KLHL28_chr14_44919324_44966947	0/0	t0008	4807	5	0	0	5	0	0	copy fasta	KLHL28	chr14	44919324	44966947
KLHL28_chr14_44919324_44966947	0/0	t0009	4808	5	1	1	1	0	2	copy fasta	KLHL28	chr14	44919324	44966947
KLHL28_chr14_44919324_44966947	0/0	t0010	4806	4	1	0	2	0	1	copy fasta	KLHL28	chr14	44919324	44966947
KLHL28_chr14_44919324_44966947	0/0	t0011	4807	3	1	1	0	1	0	copy fasta	KLHL28	chr14	44919324	44966947
KLHL28_chr14_44919324_44966947	0/0	t0012	4807	3	3	0	0	0	0	copy fasta	KLHL28	chr14	44919324	44966947
KLHL28_chr14_44919324_44966947	0/0	t0013	4807	3	3	0	0	0	0	copy fasta	KLHL28	chr14	44919324	44966947
KLHL28_chr14_44919324_44966947	0/0	t0014	4806	2	0	0	1	0	1	copy fasta	KLHL28	chr14	44919324	44966947
KLHL28_chr14_44919324_44966947	0/0	t0015	4807	2	0	2	0	0	0	copy fasta	KLHL28	chr14	44919324	44966947
KLHL28_chr14_44919324_44966947	0/0	t0016	4808	2	2	0	0	0	0	copy fasta	KLHL28	chr14	44919324	44966947
KLHL28_chr14_44919324_44966947	0/0	t0017	4807	2	2	0	0	0	0	copy fasta	KLHL28	chr14	44919324	44966947
KLHL28_chr14_44919324_44966947	0/0	t0018	4807	2	2	0	0	0	0	copy fasta	KLHL28	chr14	44919324	44966947
KLHL28_chr14_44919324_44966947	0/0	t0019	4807	1	1	0	0	0	0	copy fasta	KLHL28	chr14	44919324	44966947
KLHL28_chr14_44919324_44966947	0/0	t0020	4808	1	0	0	0	0	1	copy fasta	KLHL28	chr14	44919324	44966947
KLHL28_chr14_44919324_44966947	0/0	t0021	4807	1	0	0	1	0	0	copy fasta	KLHL28	chr14	44919324	44966947
KLHL28_chr14_44919324_44966947	0/0	t0022	4807	1	0	0	1	0	0	copy fasta	KLHL28	chr14	44919324	44966947
KLHL28_chr14_44919324_44966947	0/0	t0023	4806	1	1	0	0	0	0	copy fasta	KLHL28	chr14	44919324	44966947
KLHL28_chr14_44919324_44966947	0/0	t0024	4807	1	0	0	0	1	0	copy fasta	KLHL28	chr14	44919324	44966947
KLHL28_chr14_44919324_44966947	0/0	t0025	4807	1	0	0	1	0	0	copy fasta	KLHL28	chr14	44919324	44966947
KLHL28_chr14_44919324_44966947	0/0	t0026	4807	1	0	0	1	0	0	copy fasta	KLHL28	chr14	44919324	44966947
KLHL28_chr14_44919324_44966947	0/0	t0027	4807	1	0	1	0	0	0	copy fasta	KLHL28	chr14	44919324	44966947
KLHL28_chr14_44919324_44966947	0/0	t0028	4807	1	0	0	0	0	1	copy fasta	KLHL28	chr14	44919324	44966947
KLHL28_chr14_44919324_44966947	0/1	t0029	4807	1	0	0	0	0	0	copy fasta	KLHL28	chr14	44919324	44966947
KLHL28_chr14_44919324_44966947	0/0	t0030	4807	1	1	0	0	0	0	copy fasta	KLHL28	chr14	44919324	44966947
KLHL28_chr14_44919324_44966947	0/0	t0031	4807	1	0	0	1	0	0	copy fasta	KLHL28	chr14	44919324	44966947