JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KLHL28_chr14_44919324_44966947	0/0	t0032	4807	1	1	0	0	0	0	copy fasta	KLHL28	chr14	44919324	44966947
KLHL28_chr14_44919324_44966947	0/0	t0033	4807	1	0	0	1	0	0	copy fasta	KLHL28	chr14	44919324	44966947
KLHL28_chr14_44919324_44966947	0/0	t0034	4807	1	1	0	0	0	0	copy fasta	KLHL28	chr14	44919324	44966947
KLHL28_chr14_44919324_44966947	0/0	t0035	4807	1	1	0	0	0	0	copy fasta	KLHL28	chr14	44919324	44966947
KLHL28_chr14_44919324_44966947	0/0	t0036	4807	1	0	0	0	0	1	copy fasta	KLHL28	chr14	44919324	44966947
KLHL28_chr14_44919324_44966947	0/0	t0037	4807	1	0	0	1	0	0	copy fasta	KLHL28	chr14	44919324	44966947
KLHL29_chr2_23380179_23713606	0/0	t0001	2699	48	10	13	17	0	8	copy fasta	KLHL29	chr2	23380179	23713606
KLHL29_chr2_23380179_23713606	0/1	t0002	2699	35	15	9	6	1	3	copy fasta	KLHL29	chr2	23380179	23713606
KLHL29_chr2_23380179_23713606	0/0	t0003	2699	22	20	2	0	0	0	copy fasta	KLHL29	chr2	23380179	23713606
KLHL29_chr2_23380179_23713606	0/0	t0004	2702	12	1	1	5	2	3	copy fasta	KLHL29	chr2	23380179	23713606
KLHL29_chr2_23380179_23713606	0/0	t0005	2702	10	2	3	2	0	3	copy fasta	KLHL29	chr2	23380179	23713606
KLHL29_chr2_23380179_23713606	0/0	t0006	2699	4	0	1	0	1	2	copy fasta	KLHL29	chr2	23380179	23713606
KLHL29_chr2_23380179_23713606	0/0	t0007	2699	4	1	2	0	1	0	copy fasta	KLHL29	chr2	23380179	23713606
KLHL29_chr2_23380179_23713606	0/0	t0008	2702	2	0	1	0	0	1	copy fasta	KLHL29	chr2	23380179	23713606
KLHL29_chr2_23380179_23713606	0/0	t0009	2699	2	0	1	0	0	1	copy fasta	KLHL29	chr2	23380179	23713606
KLHL29_chr2_23380179_23713606	0/0	t0010	2699	2	2	0	0	0	0	copy fasta	KLHL29	chr2	23380179	23713606
KLHL29_chr2_23380179_23713606	0/0	t0011	2699	2	0	2	0	0	0	copy fasta	KLHL29	chr2	23380179	23713606
KLHL29_chr2_23380179_23713606	0/0	t0012	2699	2	2	0	0	0	0	copy fasta	KLHL29	chr2	23380179	23713606
KLHL29_chr2_23380179_23713606	0/0	t0013	2702	1	0	0	0	0	1	copy fasta	KLHL29	chr2	23380179	23713606
KLHL29_chr2_23380179_23713606	0/0	t0014	2702	1	0	1	0	0	0	copy fasta	KLHL29	chr2	23380179	23713606
KLHL29_chr2_23380179_23713606	0/0	t0015	2702	1	0	0	0	1	0	copy fasta	KLHL29	chr2	23380179	23713606
KLHL29_chr2_23380179_23713606	1/0	t0016	2698	1	0	0	0	0	0	copy fasta	KLHL29	chr2	23380179	23713606
KLHL29_chr2_23380179_23713606	0/0	t0017	2699	1	0	0	1	0	0	copy fasta	KLHL29	chr2	23380179	23713606
KLHL29_chr2_23380179_23713606	0/0	t0018	2699	1	0	0	0	0	1	copy fasta	KLHL29	chr2	23380179	23713606
KLHL29_chr2_23380179_23713606	0/0	t0019	2699	1	0	0	0	0	1	copy fasta	KLHL29	chr2	23380179	23713606
KLHL29_chr2_23380179_23713606	0/0	t0020	2702	1	0	0	0	0	1	copy fasta	KLHL29	chr2	23380179	23713606
KLHL29_chr2_23380179_23713606	0/0	t0021	2702	1	0	0	0	0	1	copy fasta	KLHL29	chr2	23380179	23713606
KLHL29_chr2_23380179_23713606	0/0	t0022	2708	1	1	0	0	0	0	copy fasta	KLHL29	chr2	23380179	23713606
KLHL29_chr2_23380179_23713606	0/0	t0023	2708	1	1	0	0	0	0	copy fasta	KLHL29	chr2	23380179	23713606
KLHL29_chr2_23380179_23713606	0/0	t0024	2708	1	1	0	0	0	0	copy fasta	KLHL29	chr2	23380179	23713606
KLHL29_chr2_23380179_23713606	0/0	t0025	2702	1	0	1	0	0	0	copy fasta	KLHL29	chr2	23380179	23713606
KLHL29_chr2_23380179_23713606	0/0	t0026	2702	1	0	1	0	0	0	copy fasta	KLHL29	chr2	23380179	23713606
KLHL29_chr2_23380179_23713606	0/0	t0027	2699	1	0	0	1	0	0	copy fasta	KLHL29	chr2	23380179	23713606
KLHL2_chr4_165202561_165328147	1/1	t0001	1404	241	81	40	91	9	18	copy fasta	KLHL2	chr4	165202561	165328147
KLHL2_chr4_165202561_165328147	0/0	t0002	1404	8	5	2	0	1	0	copy fasta	KLHL2	chr4	165202561	165328147
KLHL2_chr4_165202561_165328147	0/0	t0003	1404	2	2	0	0	0	0	copy fasta	KLHL2	chr4	165202561	165328147
KLHL2_chr4_165202561_165328147	0/0	t0004	1404	1	0	0	1	0	0	copy fasta	KLHL2	chr4	165202561	165328147
KLHL2_chr4_165202561_165328147	0/0	t0005	1404	1	1	0	0	0	0	copy fasta	KLHL2	chr4	165202561	165328147
KLHL2_chr4_165202561_165328147	0/0	t0006	1404	1	1	0	0	0	0	copy fasta	KLHL2	chr4	165202561	165328147
KLHL30_chr2_238133668_238157947	0/0	t0001	2044	140	39	25	65	3	8	copy fasta	KLHL30	chr2	238133668	238157947
KLHL30_chr2_238133668_238157947	0/1	t0002	2044	62	3	7	36	5	10	copy fasta	KLHL30	chr2	238133668	238157947
KLHL30_chr2_238133668_238157947	1/0	t0003	2044	45	1	20	9	4	10	copy fasta	KLHL30	chr2	238133668	238157947
KLHL30_chr2_238133668_238157947	0/0	t0004	2045	34	6	7	19	1	1	copy fasta	KLHL30	chr2	238133668	238157947
KLHL30_chr2_238133668_238157947	0/0	t0005	2043	26	4	5	17	0	0	copy fasta	KLHL30	chr2	238133668	238157947
KLHL30_chr2_238133668_238157947	0/0	t0006	2045	26	7	2	5	2	10	copy fasta	KLHL30	chr2	238133668	238157947
KLHL30_chr2_238133668_238157947	0/0	t0007	2042	16	6	0	9	0	1	copy fasta	KLHL30	chr2	238133668	238157947
KLHL30_chr2_238133668_238157947	0/0	t0008	2044	14	1	2	3	2	6	copy fasta	KLHL30	chr2	238133668	238157947
KLHL30_chr2_238133668_238157947	0/0	t0009	2044	9	0	0	9	0	0	copy fasta	KLHL30	chr2	238133668	238157947
KLHL30_chr2_238133668_238157947	0/0	t0010	2042	6	0	0	6	0	0	copy fasta	KLHL30	chr2	238133668	238157947
KLHL30_chr2_238133668_238157947	0/0	t0011	2044	5	0	0	5	0	0	copy fasta	KLHL30	chr2	238133668	238157947