JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KLHL30_chr2_238133668_238157947	0/0	t0012	2044	5	4	1	0	0	0	copy fasta	KLHL30	chr2	238133668	238157947
KLHL30_chr2_238133668_238157947	0/0	t0013	2044	5	5	0	0	0	0	copy fasta	KLHL30	chr2	238133668	238157947
KLHL30_chr2_238133668_238157947	0/0	t0014	2045	5	0	5	0	0	0	copy fasta	KLHL30	chr2	238133668	238157947
KLHL30_chr2_238133668_238157947	0/0	t0015	2045	4	0	1	3	0	0	copy fasta	KLHL30	chr2	238133668	238157947
KLHL30_chr2_238133668_238157947	0/0	t0016	2045	4	0	3	1	0	0	copy fasta	KLHL30	chr2	238133668	238157947
KLHL30_chr2_238133668_238157947	0/0	t0017	2044	3	3	0	0	0	0	copy fasta	KLHL30	chr2	238133668	238157947
KLHL30_chr2_238133668_238157947	0/0	t0018	2043	2	0	0	2	0	0	copy fasta	KLHL30	chr2	238133668	238157947
KLHL30_chr2_238133668_238157947	0/0	t0019	2044	2	2	0	0	0	0	copy fasta	KLHL30	chr2	238133668	238157947
KLHL30_chr2_238133668_238157947	0/0	t0020	2044	2	1	1	0	0	0	copy fasta	KLHL30	chr2	238133668	238157947
KLHL30_chr2_238133668_238157947	0/0	t0021	2043	2	0	0	2	0	0	copy fasta	KLHL30	chr2	238133668	238157947
KLHL30_chr2_238133668_238157947	0/0	t0022	2044	2	0	0	2	0	0	copy fasta	KLHL30	chr2	238133668	238157947
KLHL30_chr2_238133668_238157947	0/0	t0023	2045	1	0	0	1	0	0	copy fasta	KLHL30	chr2	238133668	238157947
KLHL30_chr2_238133668_238157947	0/0	t0024	2042	1	0	0	1	0	0	copy fasta	KLHL30	chr2	238133668	238157947
KLHL30_chr2_238133668_238157947	0/0	t0025	2044	1	0	0	1	0	0	copy fasta	KLHL30	chr2	238133668	238157947
KLHL30_chr2_238133668_238157947	0/0	t0026	2044	1	0	1	0	0	0	copy fasta	KLHL30	chr2	238133668	238157947
KLHL30_chr2_238133668_238157947	0/0	t0027	2044	1	1	0	0	0	0	copy fasta	KLHL30	chr2	238133668	238157947
KLHL30_chr2_238133668_238157947	0/0	t0028	2044	1	1	0	0	0	0	copy fasta	KLHL30	chr2	238133668	238157947
KLHL30_chr2_238133668_238157947	0/0	t0029	2041	1	0	0	1	0	0	copy fasta	KLHL30	chr2	238133668	238157947
KLHL30_chr2_238133668_238157947	0/0	t0030	2042	1	0	0	1	0	0	copy fasta	KLHL30	chr2	238133668	238157947
KLHL30_chr2_238133668_238157947	0/0	t0031	2044	1	0	1	0	0	0	copy fasta	KLHL30	chr2	238133668	238157947
KLHL30_chr2_238133668_238157947	0/0	t0032	2045	1	1	0	0	0	0	copy fasta	KLHL30	chr2	238133668	238157947
KLHL30_chr2_238133668_238157947	0/0	t0033	2045	1	0	0	1	0	0	copy fasta	KLHL30	chr2	238133668	238157947
KLHL30_chr2_238133668_238157947	0/0	t0034	2044	1	0	0	1	0	0	copy fasta	KLHL30	chr2	238133668	238157947
KLHL30_chr2_238133668_238157947	0/0	t0035	2045	1	0	0	1	0	0	copy fasta	KLHL30	chr2	238133668	238157947
KLHL30_chr2_238133668_238157947	0/0	t0036	2043	1	0	1	0	0	0	copy fasta	KLHL30	chr2	238133668	238157947
KLHL30_chr2_238133668_238157947	0/0	t0037	2043	1	0	0	1	0	0	copy fasta	KLHL30	chr2	238133668	238157947
KLHL30_chr2_238133668_238157947	0/0	t0038	2043	1	1	0	0	0	0	copy fasta	KLHL30	chr2	238133668	238157947
KLHL30_chr2_238133668_238157947	0/0	t0039	2044	1	1	0	0	0	0	copy fasta	KLHL30	chr2	238133668	238157947
KLHL30_chr2_238133668_238157947	0/0	t0040	2045	1	1	0	0	0	0	copy fasta	KLHL30	chr2	238133668	238157947
KLHL30_chr2_238133668_238157947	0/0	t0041	2044	1	0	0	1	0	0	copy fasta	KLHL30	chr2	238133668	238157947
KLHL30_chr2_238133668_238157947	0/0	t0042	2044	1	0	0	0	1	0	copy fasta	KLHL30	chr2	238133668	238157947
KLHL30_chr2_238133668_238157947	0/0	t0043	2044	1	0	0	1	0	0	copy fasta	KLHL30	chr2	238133668	238157947
KLHL30_chr2_238133668_238157947	0/0	t0044	2045	1	0	0	1	0	0	copy fasta	KLHL30	chr2	238133668	238157947
KLHL30_chr2_238133668_238157947	0/0	t0045	2045	1	1	0	0	0	0	copy fasta	KLHL30	chr2	238133668	238157947
KLHL30_chr2_238133668_238157947	0/0	t0046	2045	1	1	0	0	0	0	copy fasta	KLHL30	chr2	238133668	238157947
KLHL30_chr2_238133668_238157947	0/0	t0047	2045	1	1	0	0	0	0	copy fasta	KLHL30	chr2	238133668	238157947
KLHL30_chr2_238133668_238157947	0/0	t0048	2044	1	1	0	0	0	0	copy fasta	KLHL30	chr2	238133668	238157947
KLHL30_chr2_238133668_238157947	0/0	t0049	2043	1	1	0	0	0	0	copy fasta	KLHL30	chr2	238133668	238157947
KLHL30_chr2_238133668_238157947	0/0	t0050	2045	1	1	0	0	0	0	copy fasta	KLHL30	chr2	238133668	238157947
KLHL30_chr2_238133668_238157947	0/0	t0051	2043	1	0	1	0	0	0	copy fasta	KLHL30	chr2	238133668	238157947
KLHL30_chr2_238133668_238157947	0/0	t0052	2043	1	0	0	1	0	0	copy fasta	KLHL30	chr2	238133668	238157947
KLHL30_chr2_238133668_238157947	0/0	t0053	2044	1	0	1	0	0	0	copy fasta	KLHL30	chr2	238133668	238157947
KLHL31_chr6_53642916_53670756	0/0	t0001	3879	45	8	2	29	0	6	copy fasta	KLHL31	chr6	53642916	53670756
KLHL31_chr6_53642916_53670756	0/0	t0002	3887	44	4	9	25	1	5	copy fasta	KLHL31	chr6	53642916	53670756
KLHL31_chr6_53642916_53670756	0/0	t0003	3888	39	2	16	12	0	9	copy fasta	KLHL31	chr6	53642916	53670756
KLHL31_chr6_53642916_53670756	0/1	t0004	3878	27	0	4	16	4	2	copy fasta	KLHL31	chr6	53642916	53670756
KLHL31_chr6_53642916_53670756	0/0	t0005	3889	23	1	11	9	1	1	copy fasta	KLHL31	chr6	53642916	53670756
KLHL31_chr6_53642916_53670756	0/0	t0006	3886	22	1	4	13	2	2	copy fasta	KLHL31	chr6	53642916	53670756
KLHL31_chr6_53642916_53670756	0/0	t0007	3881	19	0	1	17	1	0	copy fasta	KLHL31	chr6	53642916	53670756
KLHL31_chr6_53642916_53670756	0/0	t0008	3880	16	6	2	7	0	1	copy fasta	KLHL31	chr6	53642916	53670756