JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KLHL31_chr6_53642916_53670756	0/0	t0009	3878	13	12	1	0	0	0	copy fasta	KLHL31	chr6	53642916	53670756
KLHL31_chr6_53642916_53670756	0/0	t0010	3879	12	1	2	4	2	3	copy fasta	KLHL31	chr6	53642916	53670756
KLHL31_chr6_53642916_53670756	0/0	t0011	3887	10	1	2	7	0	0	copy fasta	KLHL31	chr6	53642916	53670756
KLHL31_chr6_53642916_53670756	0/0	t0012	3888	9	0	2	5	0	2	copy fasta	KLHL31	chr6	53642916	53670756
KLHL31_chr6_53642916_53670756	0/0	t0013	3885	8	3	0	4	0	1	copy fasta	KLHL31	chr6	53642916	53670756
KLHL31_chr6_53642916_53670756	0/0	t0014	3889	7	1	1	5	0	0	copy fasta	KLHL31	chr6	53642916	53670756
KLHL31_chr6_53642916_53670756	0/0	t0015	3882	6	3	3	0	0	0	copy fasta	KLHL31	chr6	53642916	53670756
KLHL31_chr6_53642916_53670756	0/0	t0016	3872	6	6	0	0	0	0	copy fasta	KLHL31	chr6	53642916	53670756
KLHL31_chr6_53642916_53670756	0/0	t0017	3882	6	0	3	0	0	3	copy fasta	KLHL31	chr6	53642916	53670756
KLHL31_chr6_53642916_53670756	0/0	t0018	3890	6	0	2	2	0	2	copy fasta	KLHL31	chr6	53642916	53670756
KLHL31_chr6_53642916_53670756	0/0	t0019	3881	5	2	1	0	0	2	copy fasta	KLHL31	chr6	53642916	53670756
KLHL31_chr6_53642916_53670756	0/0	t0020	3878	5	4	0	0	0	1	copy fasta	KLHL31	chr6	53642916	53670756
KLHL31_chr6_53642916_53670756	0/0	t0021	3879	5	1	0	2	1	1	copy fasta	KLHL31	chr6	53642916	53670756
KLHL31_chr6_53642916_53670756	0/0	t0022	3880	4	1	1	0	0	2	copy fasta	KLHL31	chr6	53642916	53670756
KLHL31_chr6_53642916_53670756	1/0	t0023	3872	3	2	0	0	0	0	copy fasta	KLHL31	chr6	53642916	53670756
KLHL31_chr6_53642916_53670756	0/0	t0024	3872	3	3	0	0	0	0	copy fasta	KLHL31	chr6	53642916	53670756
KLHL31_chr6_53642916_53670756	0/0	t0025	3879	3	3	0	0	0	0	copy fasta	KLHL31	chr6	53642916	53670756
KLHL31_chr6_53642916_53670756	0/0	t0026	3881	3	0	0	3	0	0	copy fasta	KLHL31	chr6	53642916	53670756
KLHL31_chr6_53642916_53670756	0/0	t0027	3889	3	0	0	3	0	0	copy fasta	KLHL31	chr6	53642916	53670756
KLHL31_chr6_53642916_53670756	0/0	t0028	3879	2	1	0	0	1	0	copy fasta	KLHL31	chr6	53642916	53670756
KLHL31_chr6_53642916_53670756	0/0	t0029	3880	2	0	2	0	0	0	copy fasta	KLHL31	chr6	53642916	53670756
KLHL31_chr6_53642916_53670756	0/0	t0030	3879	2	0	0	2	0	0	copy fasta	KLHL31	chr6	53642916	53670756
KLHL31_chr6_53642916_53670756	0/0	t0031	3879	2	1	0	1	0	0	copy fasta	KLHL31	chr6	53642916	53670756
KLHL31_chr6_53642916_53670756	0/0	t0032	3879	2	1	1	0	0	0	copy fasta	KLHL31	chr6	53642916	53670756
KLHL31_chr6_53642916_53670756	0/0	t0033	3880	2	1	0	0	0	1	copy fasta	KLHL31	chr6	53642916	53670756
KLHL31_chr6_53642916_53670756	0/0	t0034	3881	2	0	1	1	0	0	copy fasta	KLHL31	chr6	53642916	53670756
KLHL31_chr6_53642916_53670756	0/0	t0035	3882	2	1	0	1	0	0	copy fasta	KLHL31	chr6	53642916	53670756
KLHL31_chr6_53642916_53670756	0/0	t0036	3888	2	0	0	2	0	0	copy fasta	KLHL31	chr6	53642916	53670756
KLHL31_chr6_53642916_53670756	0/0	t0037	3872	1	0	1	0	0	0	copy fasta	KLHL31	chr6	53642916	53670756
KLHL31_chr6_53642916_53670756	0/0	t0038	3879	1	1	0	0	0	0	copy fasta	KLHL31	chr6	53642916	53670756
KLHL31_chr6_53642916_53670756	0/0	t0039	3881	1	1	0	0	0	0	copy fasta	KLHL31	chr6	53642916	53670756
KLHL31_chr6_53642916_53670756	0/0	t0040	3881	1	0	0	0	1	0	copy fasta	KLHL31	chr6	53642916	53670756
KLHL31_chr6_53642916_53670756	0/0	t0041	3883	1	1	0	0	0	0	copy fasta	KLHL31	chr6	53642916	53670756
KLHL31_chr6_53642916_53670756	0/0	t0042	3884	1	1	0	0	0	0	copy fasta	KLHL31	chr6	53642916	53670756
KLHL31_chr6_53642916_53670756	0/0	t0043	3885	1	1	0	0	0	0	copy fasta	KLHL31	chr6	53642916	53670756
KLHL31_chr6_53642916_53670756	0/0	t0044	3880	1	1	0	0	0	0	copy fasta	KLHL31	chr6	53642916	53670756
KLHL31_chr6_53642916_53670756	0/0	t0045	3880	1	1	0	0	0	0	copy fasta	KLHL31	chr6	53642916	53670756
KLHL31_chr6_53642916_53670756	0/0	t0046	3882	1	1	0	0	0	0	copy fasta	KLHL31	chr6	53642916	53670756
KLHL31_chr6_53642916_53670756	0/0	t0047	3884	1	1	0	0	0	0	copy fasta	KLHL31	chr6	53642916	53670756
KLHL31_chr6_53642916_53670756	0/0	t0048	3872	1	0	0	0	1	0	copy fasta	KLHL31	chr6	53642916	53670756
KLHL31_chr6_53642916_53670756	0/0	t0049	3872	1	0	0	1	0	0	copy fasta	KLHL31	chr6	53642916	53670756
KLHL31_chr6_53642916_53670756	0/0	t0050	3872	1	0	0	1	0	0	copy fasta	KLHL31	chr6	53642916	53670756
KLHL31_chr6_53642916_53670756	0/0	t0051	3872	1	1	0	0	0	0	copy fasta	KLHL31	chr6	53642916	53670756
KLHL31_chr6_53642916_53670756	0/0	t0052	3872	1	1	0	0	0	0	copy fasta	KLHL31	chr6	53642916	53670756
KLHL31_chr6_53642916_53670756	0/0	t0053	3872	1	0	0	1	0	0	copy fasta	KLHL31	chr6	53642916	53670756
KLHL31_chr6_53642916_53670756	0/0	t0054	3878	1	0	0	0	1	0	copy fasta	KLHL31	chr6	53642916	53670756
KLHL31_chr6_53642916_53670756	0/0	t0055	3879	1	0	0	1	0	0	copy fasta	KLHL31	chr6	53642916	53670756
KLHL31_chr6_53642916_53670756	0/0	t0056	3879	1	0	0	0	0	1	copy fasta	KLHL31	chr6	53642916	53670756
KLHL31_chr6_53642916_53670756	0/0	t0057	3879	1	1	0	0	0	0	copy fasta	KLHL31	chr6	53642916	53670756
KLHL31_chr6_53642916_53670756	0/0	t0058	3879	1	1	0	0	0	0	copy fasta	KLHL31	chr6	53642916	53670756