JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KLHL31_chr6_53642916_53670756	0/0	t0059	3879	1	1	0	0	0	0	copy fasta	KLHL31	chr6	53642916	53670756
KLHL31_chr6_53642916_53670756	0/0	t0060	3880	1	0	0	1	0	0	copy fasta	KLHL31	chr6	53642916	53670756
KLHL31_chr6_53642916_53670756	0/0	t0061	3880	1	1	0	0	0	0	copy fasta	KLHL31	chr6	53642916	53670756
KLHL31_chr6_53642916_53670756	0/0	t0062	3880	1	1	0	0	0	0	copy fasta	KLHL31	chr6	53642916	53670756
KLHL31_chr6_53642916_53670756	0/0	t0063	3880	1	0	1	0	0	0	copy fasta	KLHL31	chr6	53642916	53670756
KLHL31_chr6_53642916_53670756	0/0	t0064	3880	1	1	0	0	0	0	copy fasta	KLHL31	chr6	53642916	53670756
KLHL31_chr6_53642916_53670756	0/0	t0065	3880	1	1	0	0	0	0	copy fasta	KLHL31	chr6	53642916	53670756
KLHL31_chr6_53642916_53670756	0/0	t0066	3880	1	1	0	0	0	0	copy fasta	KLHL31	chr6	53642916	53670756
KLHL31_chr6_53642916_53670756	0/0	t0067	3881	1	1	0	0	0	0	copy fasta	KLHL31	chr6	53642916	53670756
KLHL31_chr6_53642916_53670756	0/0	t0068	3883	1	1	0	0	0	0	copy fasta	KLHL31	chr6	53642916	53670756
KLHL31_chr6_53642916_53670756	0/0	t0069	3884	1	1	0	0	0	0	copy fasta	KLHL31	chr6	53642916	53670756
KLHL31_chr6_53642916_53670756	0/0	t0070	3885	1	0	0	1	0	0	copy fasta	KLHL31	chr6	53642916	53670756
KLHL31_chr6_53642916_53670756	0/0	t0071	3886	1	0	0	1	0	0	copy fasta	KLHL31	chr6	53642916	53670756
KLHL31_chr6_53642916_53670756	0/0	t0072	3886	1	0	0	1	0	0	copy fasta	KLHL31	chr6	53642916	53670756
KLHL31_chr6_53642916_53670756	0/0	t0073	3886	1	0	0	1	0	0	copy fasta	KLHL31	chr6	53642916	53670756
KLHL31_chr6_53642916_53670756	0/0	t0074	3886	1	0	0	1	0	0	copy fasta	KLHL31	chr6	53642916	53670756
KLHL31_chr6_53642916_53670756	0/0	t0075	3887	1	0	0	1	0	0	copy fasta	KLHL31	chr6	53642916	53670756
KLHL31_chr6_53642916_53670756	0/0	t0076	3887	1	0	0	1	0	0	copy fasta	KLHL31	chr6	53642916	53670756
KLHL31_chr6_53642916_53670756	0/0	t0077	3887	1	0	0	1	0	0	copy fasta	KLHL31	chr6	53642916	53670756
KLHL31_chr6_53642916_53670756	0/0	t0078	3888	1	0	0	1	0	0	copy fasta	KLHL31	chr6	53642916	53670756
KLHL31_chr6_53642916_53670756	0/0	t0079	3888	1	0	0	0	0	1	copy fasta	KLHL31	chr6	53642916	53670756
KLHL31_chr6_53642916_53670756	0/0	t0080	3889	1	0	0	1	0	0	copy fasta	KLHL31	chr6	53642916	53670756
KLHL31_chr6_53642916_53670756	0/0	t0081	3889	1	0	1	0	0	0	copy fasta	KLHL31	chr6	53642916	53670756
KLHL31_chr6_53642916_53670756	0/0	t0082	3890	1	0	0	1	0	0	copy fasta	KLHL31	chr6	53642916	53670756
KLHL31_chr6_53642916_53670756	0/0	t0083	3890	1	0	0	1	0	0	copy fasta	KLHL31	chr6	53642916	53670756
KLHL31_chr6_53642916_53670756	0/0	t0084	3891	1	1	0	0	0	0	copy fasta	KLHL31	chr6	53642916	53670756
KLHL31_chr6_53642916_53670756	0/0	t0085	3891	1	0	0	1	0	0	copy fasta	KLHL31	chr6	53642916	53670756
KLHL31_chr6_53642916_53670756	0/0	t0086	3880	1	1	0	0	0	0	copy fasta	KLHL31	chr6	53642916	53670756
KLHL32_chr6_96919728_97145753	0/0	t0001	1832	41	2	9	26	1	3	copy fasta	KLHL32	chr6	96919728	97145753
KLHL32_chr6_96919728_97145753	0/1	t0002	1832	38	12	6	15	1	3	copy fasta	KLHL32	chr6	96919728	97145753
KLHL32_chr6_96919728_97145753	0/0	t0003	1834	30	5	5	14	1	5	copy fasta	KLHL32	chr6	96919728	97145753
KLHL32_chr6_96919728_97145753	1/0	t0004	1836	28	0	3	23	0	1	copy fasta	KLHL32	chr6	96919728	97145753
KLHL32_chr6_96919728_97145753	0/0	t0005	1834	25	12	2	10	0	1	copy fasta	KLHL32	chr6	96919728	97145753
KLHL32_chr6_96919728_97145753	0/0	t0006	1830	13	4	0	3	2	4	copy fasta	KLHL32	chr6	96919728	97145753
KLHL32_chr6_96919728_97145753	0/0	t0007	1834	6	1	2	3	0	0	copy fasta	KLHL32	chr6	96919728	97145753
KLHL32_chr6_96919728_97145753	0/0	t0008	1836	6	4	0	2	0	0	copy fasta	KLHL32	chr6	96919728	97145753
KLHL32_chr6_96919728_97145753	0/0	t0009	1828	6	4	0	1	0	1	copy fasta	KLHL32	chr6	96919728	97145753
KLHL32_chr6_96919728_97145753	0/0	t0010	1832	5	2	0	1	0	2	copy fasta	KLHL32	chr6	96919728	97145753
KLHL32_chr6_96919728_97145753	0/0	t0011	1838	4	0	0	4	0	0	copy fasta	KLHL32	chr6	96919728	97145753
KLHL32_chr6_96919728_97145753	0/0	t0012	1830	3	2	1	0	0	0	copy fasta	KLHL32	chr6	96919728	97145753
KLHL32_chr6_96919728_97145753	0/0	t0013	1828	3	3	0	0	0	0	copy fasta	KLHL32	chr6	96919728	97145753
KLHL32_chr6_96919728_97145753	0/0	t0014	1840	2	2	0	0	0	0	copy fasta	KLHL32	chr6	96919728	97145753
KLHL32_chr6_96919728_97145753	0/0	t0015	1840	2	0	1	1	0	0	copy fasta	KLHL32	chr6	96919728	97145753
KLHL32_chr6_96919728_97145753	0/0	t0016	1838	2	2	0	0	0	0	copy fasta	KLHL32	chr6	96919728	97145753
KLHL32_chr6_96919728_97145753	0/0	t0017	1838	2	2	0	0	0	0	copy fasta	KLHL32	chr6	96919728	97145753
KLHL32_chr6_96919728_97145753	0/0	t0018	1832	2	2	0	0	0	0	copy fasta	KLHL32	chr6	96919728	97145753
KLHL32_chr6_96919728_97145753	0/0	t0019	1830	2	0	1	1	0	0	copy fasta	KLHL32	chr6	96919728	97145753
KLHL32_chr6_96919728_97145753	0/0	t0020	1826	2	1	0	0	1	0	copy fasta	KLHL32	chr6	96919728	97145753
KLHL32_chr6_96919728_97145753	0/0	t0021	1848	1	0	1	0	0	0	copy fasta	KLHL32	chr6	96919728	97145753
KLHL32_chr6_96919728_97145753	0/0	t0022	1846	1	0	1	0	0	0	copy fasta	KLHL32	chr6	96919728	97145753