Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AP2B1_chr17_35582322_35731413	0/0	t0014	2845	1	0	0	1	0	0	copy fasta	AP2B1	chr17	35582322	35731413
AP2B1_chr17_35582322_35731413	0/0	t0015	2845	1	1	0	0	0	0	copy fasta	AP2B1	chr17	35582322	35731413
AP2B1_chr17_35582322_35731413	0/0	t0016	2845	1	0	0	1	0	0	copy fasta	AP2B1	chr17	35582322	35731413
AP2B1_chr17_35582322_35731413	0/0	t0017	2845	1	0	0	1	0	0	copy fasta	AP2B1	chr17	35582322	35731413
AP2B1_chr17_35582322_35731413	0/0	t0018	2845	1	0	0	1	0	0	copy fasta	AP2B1	chr17	35582322	35731413
AP2B1_chr17_35582322_35731413	0/0	t0019	2845	1	0	0	0	1	0	copy fasta	AP2B1	chr17	35582322	35731413
AP2B1_chr17_35582322_35731413	0/0	t0020	2845	1	0	0	0	1	0	copy fasta	AP2B1	chr17	35582322	35731413
AP2B1_chr17_35582322_35731413	0/0	t0021	2845	1	0	0	1	0	0	copy fasta	AP2B1	chr17	35582322	35731413
AP2M1_chr3_184169855_184189091	1/1	t0001	624	385	70	73	179	13	48	copy fasta	AP2M1	chr3	184169855	184189091
AP2M1_chr3_184169855_184189091	0/0	t0002	624	15	15	0	0	0	0	copy fasta	AP2M1	chr3	184169855	184189091
AP2M1_chr3_184169855_184189091	0/0	t0003	624	10	0	0	10	0	0	copy fasta	AP2M1	chr3	184169855	184189091
AP2M1_chr3_184169855_184189091	0/0	t0004	624	6	5	1	0	0	0	copy fasta	AP2M1	chr3	184169855	184189091
AP2M1_chr3_184169855_184189091	0/0	t0005	624	3	0	0	3	0	0	copy fasta	AP2M1	chr3	184169855	184189091
AP2M1_chr3_184169855_184189091	0/0	t0006	624	2	2	0	0	0	0	copy fasta	AP2M1	chr3	184169855	184189091
AP2M1_chr3_184169855_184189091	0/0	t0007	624	1	0	0	0	1	0	copy fasta	AP2M1	chr3	184169855	184189091
AP2S1_chr19_46833167_46855846	1/1	t0001	361	364	75	62	169	13	43	copy fasta	AP2S1	chr19	46833167	46855846
AP2S1_chr19_46833167_46855846	0/0	t0002	361	41	17	13	3	5	3	copy fasta	AP2S1	chr19	46833167	46855846
AP2S1_chr19_46833167_46855846	0/0	t0003	361	9	0	5	4	0	0	copy fasta	AP2S1	chr19	46833167	46855846
AP2S1_chr19_46833167_46855846	0/0	t0004	361	6	6	0	0	0	0	copy fasta	AP2S1	chr19	46833167	46855846
AP2S1_chr19_46833167_46855846	0/0	t0005	361	2	0	0	2	0	0	copy fasta	AP2S1	chr19	46833167	46855846
AP2S1_chr19_46833167_46855846	0/0	t0006	361	1	0	0	0	0	1	copy fasta	AP2S1	chr19	46833167	46855846
AP2S1_chr19_46833167_46855846	0/0	t0007	361	1	0	0	0	0	1	copy fasta	AP2S1	chr19	46833167	46855846
AP3B1_chr5_77997326_78299698	1/1	t0001	696	121	27	24	43	6	19	copy fasta	AP3B1	chr5	77997326	78299698
AP3B1_chr5_77997326_78299698	0/0	t0002	696	103	33	20	41	2	7	copy fasta	AP3B1	chr5	77997326	78299698
AP3B1_chr5_77997326_78299698	0/0	t0003	696	1	0	1	0	0	0	copy fasta	AP3B1	chr5	77997326	78299698
AP3B1_chr5_77997326_78299698	0/0	t0004	696	1	0	1	0	0	0	copy fasta	AP3B1	chr5	77997326	78299698
AP3B2_chr15_82654281_82714875	1/1	t0001	449	349	82	57	161	17	30	copy fasta	AP3B2	chr15	82654281	82714875
AP3B2_chr15_82654281_82714875	0/0	t0002	449	5	0	3	0	0	2	copy fasta	AP3B2	chr15	82654281	82714875
AP3B2_chr15_82654281_82714875	0/0	t0003	454	5	0	0	5	0	0	copy fasta	AP3B2	chr15	82654281	82714875
AP3B2_chr15_82654281_82714875	0/0	t0004	452	3	0	3	0	0	0	copy fasta	AP3B2	chr15	82654281	82714875
AP3B2_chr15_82654281_82714875	0/0	t0005	449	3	3	0	0	0	0	copy fasta	AP3B2	chr15	82654281	82714875
AP3B2_chr15_82654281_82714875	0/0	t0006	449	1	0	0	0	1	0	copy fasta	AP3B2	chr15	82654281	82714875
AP3B2_chr15_82654281_82714875	0/0	t0007	449	1	0	1	0	0	0	copy fasta	AP3B2	chr15	82654281	82714875
AP3B2_chr15_82654281_82714875	0/0	t0008	449	1	1	0	0	0	0	copy fasta	AP3B2	chr15	82654281	82714875
AP3D1_chr19_2095988_2156566	1/1	t0001	1418	204	36	50	80	11	25	copy fasta	AP3D1	chr19	2095988	2156566
AP3D1_chr19_2095988_2156566	0/0	t0002	1428	131	46	13	63	5	4	copy fasta	AP3D1	chr19	2095988	2156566
AP3D1_chr19_2095988_2156566	0/0	t0003	1418	37	0	4	28	0	5	copy fasta	AP3D1	chr19	2095988	2156566
AP3D1_chr19_2095988_2156566	0/0	t0004	1428	10	1	1	0	2	6	copy fasta	AP3D1	chr19	2095988	2156566
AP3D1_chr19_2095988_2156566	0/0	t0005	1428	7	7	0	0	0	0	copy fasta	AP3D1	chr19	2095988	2156566
AP3D1_chr19_2095988_2156566	0/0	t0006	1418	2	2	0	0	0	0	copy fasta	AP3D1	chr19	2095988	2156566
AP3D1_chr19_2095988_2156566	0/0	t0007	1428	2	2	0	0	0	0	copy fasta	AP3D1	chr19	2095988	2156566
AP3D1_chr19_2095988_2156566	0/0	t0008	1428	2	0	0	2	0	0	copy fasta	AP3D1	chr19	2095988	2156566
AP3D1_chr19_2095988_2156566	0/0	t0009	1428	2	0	0	2	0	0	copy fasta	AP3D1	chr19	2095988	2156566
AP3D1_chr19_2095988_2156566	0/0	t0010	1418	2	1	0	0	0	1	copy fasta	AP3D1	chr19	2095988	2156566
AP3D1_chr19_2095988_2156566	0/0	t0011	1428	2	2	0	0	0	0	copy fasta	AP3D1	chr19	2095988	2156566
AP3D1_chr19_2095988_2156566	0/0	t0012	1418	2	0	2	0	0	0	copy fasta	AP3D1	chr19	2095988	2156566
AP3D1_chr19_2095988_2156566	0/0	t0013	1428	1	1	0	0	0	0	copy fasta	AP3D1	chr19	2095988	2156566
AP3D1_chr19_2095988_2156566	0/0	t0014	1428	1	0	0	0	0	1	copy fasta	AP3D1	chr19	2095988	2156566
AP3D1_chr19_2095988_2156566	0/0	t0015	1428	1	0	0	1	0	0	copy fasta	AP3D1	chr19	2095988	2156566
AP3M1_chr10_74115255_74155828	1/0	t0001	3633	108	16	21	53	3	14	copy fasta	AP3M1	chr10	74115255	74155828