JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KLHL32_chr6_96919728_97145753	0/0	t0023	1836	1	1	0	0	0	0	copy fasta	KLHL32	chr6	96919728	97145753
KLHL32_chr6_96919728_97145753	0/0	t0024	1838	1	0	0	1	0	0	copy fasta	KLHL32	chr6	96919728	97145753
KLHL32_chr6_96919728_97145753	0/0	t0025	1834	1	0	1	0	0	0	copy fasta	KLHL32	chr6	96919728	97145753
KLHL32_chr6_96919728_97145753	0/0	t0026	1836	1	1	0	0	0	0	copy fasta	KLHL32	chr6	96919728	97145753
KLHL32_chr6_96919728_97145753	0/0	t0027	1836	1	0	0	1	0	0	copy fasta	KLHL32	chr6	96919728	97145753
KLHL32_chr6_96919728_97145753	0/0	t0028	1832	1	1	0	0	0	0	copy fasta	KLHL32	chr6	96919728	97145753
KLHL32_chr6_96919728_97145753	0/0	t0029	1832	1	0	1	0	0	0	copy fasta	KLHL32	chr6	96919728	97145753
KLHL32_chr6_96919728_97145753	0/0	t0030	1834	1	1	0	0	0	0	copy fasta	KLHL32	chr6	96919728	97145753
KLHL32_chr6_96919728_97145753	0/0	t0031	1834	1	1	0	0	0	0	copy fasta	KLHL32	chr6	96919728	97145753
KLHL32_chr6_96919728_97145753	0/0	t0032	1834	1	1	0	0	0	0	copy fasta	KLHL32	chr6	96919728	97145753
KLHL32_chr6_96919728_97145753	0/0	t0033	1834	1	1	0	0	0	0	copy fasta	KLHL32	chr6	96919728	97145753
KLHL32_chr6_96919728_97145753	0/0	t0034	1834	1	0	0	1	0	0	copy fasta	KLHL32	chr6	96919728	97145753
KLHL32_chr6_96919728_97145753	0/0	t0035	1834	1	0	0	0	1	0	copy fasta	KLHL32	chr6	96919728	97145753
KLHL32_chr6_96919728_97145753	0/0	t0036	1830	1	0	1	0	0	0	copy fasta	KLHL32	chr6	96919728	97145753
KLHL32_chr6_96919728_97145753	0/0	t0037	1832	1	1	0	0	0	0	copy fasta	KLHL32	chr6	96919728	97145753
KLHL32_chr6_96919728_97145753	0/0	t0038	1832	1	1	0	0	0	0	copy fasta	KLHL32	chr6	96919728	97145753
KLHL32_chr6_96919728_97145753	0/0	t0039	1832	1	0	0	1	0	0	copy fasta	KLHL32	chr6	96919728	97145753
KLHL32_chr6_96919728_97145753	0/0	t0040	1828	1	1	0	0	0	0	copy fasta	KLHL32	chr6	96919728	97145753
KLHL32_chr6_96919728_97145753	0/0	t0041	1832	1	0	1	0	0	0	copy fasta	KLHL32	chr6	96919728	97145753
KLHL32_chr6_96919728_97145753	0/0	t0042	1826	1	0	0	0	1	0	copy fasta	KLHL32	chr6	96919728	97145753
KLHL33_chr14_20420852_20441166	1/0	t0001	3085	82	1	21	54	0	5	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0002	3100	22	0	0	22	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0003	3100	17	0	7	3	3	4	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0004	3100	15	1	4	0	2	8	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0005	3099	15	14	1	0	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0006	3085	14	0	0	12	1	1	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0007	3099	14	2	1	10	0	1	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0008	3086	13	0	7	4	1	1	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0009	3100	12	3	1	6	0	2	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0010	3086	11	11	0	0	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0011	3100	10	0	0	10	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0012	3085	10	0	0	10	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0013	3085	9	1	1	6	0	1	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0014	3100	8	0	3	5	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0015	3100	8	3	3	0	1	1	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0016	3100	8	0	0	7	0	1	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0017	3100	8	0	0	8	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0018	3100	6	0	1	1	2	2	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0019	3100	5	0	0	5	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0020	3086	5	0	5	0	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0021	3100	4	0	0	0	1	3	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0022	3086	4	3	1	0	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0023	3100	4	1	0	1	2	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0024	3100	4	0	0	4	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0025	3085	4	0	0	4	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0026	3100	4	4	0	0	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0027	3085	4	0	4	0	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0028	3086	3	0	2	0	1	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0029	3086	3	1	0	0	1	1	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0030	3100	3	0	0	3	0	0	copy fasta	KLHL33	chr14	20420852	20441166