JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KLHL33_chr14_20420852_20441166	0/0	t0031	3085	3	0	0	2	0	1	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0032	3086	3	2	1	0	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0033	3086	3	0	0	3	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0034	3100	3	0	2	1	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0035	3086	3	3	0	0	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0036	3099	3	0	1	2	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0037	3086	2	0	2	0	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0038	3100	2	2	0	0	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0039	3100	2	0	0	2	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0040	3086	2	0	0	2	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0041	3100	2	1	0	0	0	1	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0042	3100	2	0	0	2	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0043	3099	2	0	0	2	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0044	3084	2	0	0	2	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0045	3086	2	2	0	0	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0046	3100	2	0	0	2	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0047	3100	2	0	0	1	0	1	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0048	3084	2	0	1	0	0	1	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0049	3100	2	0	0	0	0	2	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0050	3084	2	2	0	0	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0051	3100	2	2	0	0	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0052	3100	2	1	0	1	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0053	3086	2	0	2	0	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0054	3085	2	2	0	0	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0055	3100	2	2	0	0	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0056	3086	1	0	1	0	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0057	3085	1	0	1	0	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0058	3086	1	0	1	0	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0059	3100	1	1	0	0	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0060	3085	1	0	0	0	0	1	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0061	3100	1	0	1	0	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0062	3100	1	0	0	1	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0063	3085	1	0	0	1	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0064	3099	1	1	0	0	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0065	3085	1	0	1	0	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0066	3099	1	0	0	0	0	1	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0067	3100	1	0	0	0	0	1	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0068	3099	1	1	0	0	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0069	3099	1	0	0	1	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0070	3085	1	0	0	1	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0071	3099	1	0	0	1	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0072	3100	1	0	0	1	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0073	3100	1	0	0	1	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0074	3086	1	0	0	1	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0075	3085	1	0	0	1	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0076	3086	1	0	1	0	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0077	3084	1	1	0	0	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0078	3099	1	0	0	0	1	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0079	3100	1	0	0	1	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0080	3100	1	0	0	0	1	0	copy fasta	KLHL33	chr14	20420852	20441166