JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KLHL33_chr14_20420852_20441166	0/1	t0081	3100	1	0	0	0	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0082	3099	1	0	0	1	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0083	3085	1	0	1	0	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0084	3100	1	0	1	0	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0085	3086	1	0	1	0	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0086	3085	1	1	0	0	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0087	3087	1	0	1	0	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0088	3085	1	0	1	0	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0089	3099	1	0	1	0	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0090	3100	1	1	0	0	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0091	3085	1	1	0	0	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0092	3100	1	0	0	1	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0093	3085	1	0	0	1	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0094	3085	1	0	0	0	0	1	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0095	3085	1	0	0	1	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0096	3099	1	1	0	0	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0097	3086	1	0	1	0	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0098	3100	1	0	0	1	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0099	3086	1	1	0	0	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0100	3100	1	0	0	1	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0101	3084	1	1	0	0	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0102	3100	1	1	0	0	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0103	3085	1	0	1	0	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0104	3100	1	1	0	0	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0105	3086	1	1	0	0	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0106	3100	1	1	0	0	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0107	3099	1	0	0	1	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0108	3099	1	0	0	1	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0109	3100	1	0	0	1	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0110	3100	1	0	0	1	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0111	3085	1	0	0	1	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0112	3100	1	0	0	0	0	1	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0113	3085	1	0	0	0	1	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0114	3084	1	0	0	0	0	1	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0115	3086	1	1	0	0	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0116	3100	1	1	0	0	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0117	3100	1	0	0	1	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0118	3085	1	0	0	0	0	1	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0119	3085	1	0	0	0	0	1	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0120	3086	1	0	1	0	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0121	3085	1	0	0	1	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0122	3099	1	0	0	0	0	1	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0123	3099	1	0	1	0	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0124	3100	1	1	0	0	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0125	3085	1	0	1	0	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0126	3085	1	0	0	1	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0127	3099	1	1	0	0	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0128	3099	1	0	0	1	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0129	3100	1	1	0	0	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0130	3086	1	0	0	1	0	0	copy fasta	KLHL33	chr14	20420852	20441166