JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
KLHL33_chr14_20420852_20441166	0/0	t0131	3084	1	0	0	1	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0132	3085	1	0	0	1	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0133	3085	1	0	0	0	0	1	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0134	3085	1	0	0	1	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0135	3100	1	1	0	0	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0136	3100	1	0	0	0	0	1	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0137	3085	1	1	0	0	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0138	3083	1	1	0	0	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0139	3099	1	0	0	1	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0140	3100	1	0	0	1	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0141	3099	1	1	0	0	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0142	3099	1	1	0	0	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0143	3086	1	1	0	0	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0144	3086	1	1	0	0	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0145	3099	1	1	0	0	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0146	3100	1	1	0	0	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0147	3100	1	1	0	0	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0148	3085	1	1	0	0	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0149	3100	1	1	0	0	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL33_chr14_20420852_20441166	0/0	t0150	3100	1	1	0	0	0	0	copy fasta	KLHL33	chr14	20420852	20441166
KLHL34_chrX_21649690_21663330	1/1	t0001	1707	161	23	30	85	7	14	copy fasta	KLHL34	chrX	21649690	21663330
KLHL34_chrX_21649690_21663330	0/0	t0002	1708	47	7	16	18	2	4	copy fasta	KLHL34	chrX	21649690	21663330
KLHL34_chrX_21649690_21663330	0/0	t0003	1712	9	8	1	0	0	0	copy fasta	KLHL34	chrX	21649690	21663330
KLHL34_chrX_21649690_21663330	0/0	t0004	1709	9	8	1	0	0	0	copy fasta	KLHL34	chrX	21649690	21663330
KLHL34_chrX_21649690_21663330	0/0	t0005	1708	7	7	0	0	0	0	copy fasta	KLHL34	chrX	21649690	21663330
KLHL34_chrX_21649690_21663330	0/0	t0006	1706	5	0	2	2	0	1	copy fasta	KLHL34	chrX	21649690	21663330
KLHL34_chrX_21649690_21663330	0/0	t0007	1706	3	1	1	0	0	1	copy fasta	KLHL34	chrX	21649690	21663330
KLHL34_chrX_21649690_21663330	0/0	t0008	1709	3	3	0	0	0	0	copy fasta	KLHL34	chrX	21649690	21663330
KLHL34_chrX_21649690_21663330	0/0	t0009	1708	2	0	0	2	0	0	copy fasta	KLHL34	chrX	21649690	21663330
KLHL34_chrX_21649690_21663330	0/0	t0010	1713	2	1	1	0	0	0	copy fasta	KLHL34	chrX	21649690	21663330
KLHL34_chrX_21649690_21663330	0/0	t0011	1710	2	2	0	0	0	0	copy fasta	KLHL34	chrX	21649690	21663330
KLHL34_chrX_21649690_21663330	0/0	t0012	1707	2	2	0	0	0	0	copy fasta	KLHL34	chrX	21649690	21663330
KLHL34_chrX_21649690_21663330	0/0	t0013	1707	1	0	1	0	0	0	copy fasta	KLHL34	chrX	21649690	21663330
KLHL34_chrX_21649690_21663330	0/0	t0014	1710	1	1	0	0	0	0	copy fasta	KLHL34	chrX	21649690	21663330
KLHL34_chrX_21649690_21663330	0/0	t0015	1707	1	1	0	0	0	0	copy fasta	KLHL34	chrX	21649690	21663330
KLHL34_chrX_21649690_21663330	0/0	t0016	1712	1	1	0	0	0	0	copy fasta	KLHL34	chrX	21649690	21663330
KLHL34_chrX_21649690_21663330	0/0	t0017	1714	1	1	0	0	0	0	copy fasta	KLHL34	chrX	21649690	21663330
KLHL34_chrX_21649690_21663330	0/0	t0018	1713	1	1	0	0	0	0	copy fasta	KLHL34	chrX	21649690	21663330
KLHL34_chrX_21649690_21663330	0/0	t0019	1711	1	1	0	0	0	0	copy fasta	KLHL34	chrX	21649690	21663330
KLHL34_chrX_21649690_21663330	0/0	t0020	1712	1	1	0	0	0	0	copy fasta	KLHL34	chrX	21649690	21663330
KLHL34_chrX_21649690_21663330	0/0	t0021	1707	1	0	1	0	0	0	copy fasta	KLHL34	chrX	21649690	21663330
KLHL34_chrX_21649690_21663330	0/0	t0022	1705	1	0	1	0	0	0	copy fasta	KLHL34	chrX	21649690	21663330
KLHL34_chrX_21649690_21663330	0/0	t0023	1702	1	0	0	1	0	0	copy fasta	KLHL34	chrX	21649690	21663330
KLHL34_chrX_21649690_21663330	0/0	t0024	1706	1	1	0	0	0	0	copy fasta	KLHL34	chrX	21649690	21663330
KLHL34_chrX_21649690_21663330	0/0	t0025	1712	1	0	0	1	0	0	copy fasta	KLHL34	chrX	21649690	21663330
KLHL35_chr11_75417394_75438203	0/0	t0001	348	277	79	45	106	13	34	copy fasta	KLHL35	chr11	75417394	75438203
KLHL35_chr11_75417394_75438203	1/1	t0002	348	127	5	28	72	5	15	copy fasta	KLHL35	chr11	75417394	75438203
KLHL35_chr11_75417394_75438203	0/0	t0003	348	6	6	0	0	0	0	copy fasta	KLHL35	chr11	75417394	75438203
KLHL35_chr11_75417394_75438203	0/0	t0004	348	4	4	0	0	0	0	copy fasta	KLHL35	chr11	75417394	75438203
KLHL35_chr11_75417394_75438203	0/0	t0005	348	2	2	0	0	0	0	copy fasta	KLHL35	chr11	75417394	75438203